Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 385 / 9e-133 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 109 / 9e-27 RHF1A RING-H2 group F1A (.1) AT4G00335 63 / 2e-11 RHB1A RING-H2 finger B1A (.1.2.3) AT5G15790 60 / 3e-10 RING/U-box superfamily protein (.1.2) AT4G23450 58 / 6e-10 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G38895 59 / 7e-10 RING/U-box superfamily protein (.1.2.3) AT3G02290 59 / 8e-10 RING/U-box superfamily protein (.1.2) AT3G58720 59 / 1e-09 RING/U-box superfamily protein (.1.2) AT5G41350 57 / 3e-09 RING/U-box superfamily protein (.1) AT5G56340 55 / 5e-08 ATCRT1 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066400 [exp] 646 / 0 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 422 / 2e-147 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.008G149300 [exp] 166 / 4e-47 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.010G092300 [exp] 159 / 9e-45 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.001G101700 [exp] 66 / 4e-12 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.014G087000 [exp] 65 / 1e-11 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.010G140300 [exp] 60 / 3e-10 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.003G129900 [exp] 59 / 1e-09 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.001G068700 [exp] 58 / 1e-09 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013606 [exp] 399 / 1e-138 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 393 / 2e-135 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 393 / 7e-135 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 384 / 6e-132 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 288 / 1e-95 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 287 / 4e-95 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 171 / 2e-49 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 166 / 3e-47 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10024635 [exp] 66 / 3e-12 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10017788 [exp] 64 / 7e-12 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G200200.2 pacid=42769920 polypeptide=Potri.006G200200.2.p locus=Potri.006G200200 ID=Potri.006G200200.2.v4.1 annot-version=v4.1 ATGGAGGTTCTGGAGGTGGATGAAGCAAAGAAACCTGAAGTTCATATGACATCAGCTGCGGCATTTGTGGAAGGGGGGATCCAGGAATCATGTGATGATG CATGTAGCATTTGCCTCGAAGATTTTTGTGAAAGTGATCCCTCAACGGTCACTAATTGCAAGCATGAGTTCCATCTTCAGTGTATCCTTGAATGGTGTCA GAGAAGCTCTGAGTGTCCAATGTGTTTGCGATCCATCAGTCTTAAAGATCCCACCAGTCAAGAATTGTTTGAGGCTGTAGAACGGGAGAGGAAAATCAGA GCTGCTCCATCAAGAAATGCTACTATTTTTCATCATCCTACGCTTGGGGATTTCGAATTGCAGCATCTACCAGTTGGTGTAAGTGATTCTGAACTTGAGG AGCGTATAATCCAGCACCTGGCTGCTGCTGCTGCTATGGGAAGGACCGGCCACTTTGGCAGGGGGGGAGGGCAGAGAAACAGGTCATCTCCCCATGGTCG TCCACACTTCTTGGTATTTTCTACTCATCCTGGTGCACAGCCTTCTGGTCATGTTTCATCCTCTCTGTCTCAGCTGGGCAGGGAAAATGAACCAGCAGCA GGCTCTGTAGCTAGCCCATCCACACCACTCACTTCTGTTGAGGATGAACCATCGCAACAAACCTTACAATTGCCTCCTATTTTAACTGATCAAAGTTCCT CTGCATCTGGATCCACAGTGATGCGCCAAGGACTTTCCTTTAATAACCGGAGCACTTCTAGTCAGTCTGCACCGCCAAATCAAGATAGAGCAGGGCCATC AGAATTCCAGTCATTTTCAGTCTCCCTGAAATCTAGGCTTAATGCAGTTTCAATGAGGTATAAAGAGTCAATTTCAAGAAGTACAAGAGGGTGGAAGGAT AGGCTGTTTTCTCGTAACAGTTCAGTGTCTGATCTTGGCTCTGAAGTTCGAAGAGATGTAAATGCAGGAATTGCAACTGTATCTCGTATGATGGAGCGCC TTGAAACCAGAGATAACAGTGGAGCCAACCAAGTTTCTGTATCAACTCATTGGACTGATCGTCCAGCTGCTGAGAGGAGCAACCAGAATAATGCTGAGAC TCACATAGAGAGCCCTGTAAATGAAGGAAGTACGCCAGTTTCTTGTGCTGCAAGTTCAGCATCTACTTAA
AA sequence Show only first row Show all	>Potri.006G200200.2 pacid=42769920 polypeptide=Potri.006G200200.2.p locus=Potri.006G200200 ID=Potri.006G200200.2.v4.1 annot-version=v4.1 MEVLEVDEAKKPEVHMTSAAAFVEGGIQESCDDACSICLEDFCESDPSTVTNCKHEFHLQCILEWCQRSSECPMCLRSISLKDPTSQELFEAVERERKIR AAPSRNATIFHHPTLGDFELQHLPVGVSDSELEERIIQHLAAAAAMGRTGHFGRGGGQRNRSSPHGRPHFLVFSTHPGAQPSGHVSSSLSQLGRENEPAA GSVASPSTPLTSVEDEPSQQTLQLPPILTDQSSSASGSTVMRQGLSFNNRSTSSQSAPPNQDRAGPSEFQSFSVSLKSRLNAVSMRYKESISRSTRGWKD RLFSRNSSVSDLGSEVRRDVNAGIATVSRMMERLETRDNSGANQVSVSTHWTDRPAAERSNQNNAETHIESPVNEGSTPVSCAASSAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	0	1
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Potri.009G018900 [exp]	1.00	0.8242
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	3.46	0.7000
AT1G17080			Ribosomal protein L18ae family...		Potri.001G380200 [exp]	3.87	0.7596
					Potri.004G236100 [exp]	4.47	0.7580
AT5G13810			Glutaredoxin family protein (....		Potri.001G026600 [exp]	4.47	0.7394
AT3G62140			unknown protein		Potri.014G112900 [exp]	7.34	0.7364
AT2G01710			Chaperone DnaJ-domain superfam...		Potri.002G105500 [exp]	8.00	0.6867
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	8.36	0.7161
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Potri.009G135201 [exp]	10.72	0.6732
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Potri.016G076400 [exp]	11.53	0.6803

Compare expression of checked genes

Potri.006G200200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.