Plant FIBer expression Database

Potri.006G200300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06390 616 / 0 FLA17 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
AT3G11700 597 / 0 FLA18 FASCICLIN-like arabinogalactan protein 18 precursor (.1)
AT2G35860 591 / 0 FLA16 FASCICLIN-like arabinogalactan protein 16 precursor (.1)
AT3G52370 578 / 0 FLA15 FASCICLIN-like arabinogalactan protein 15 precursor (.1)
AT5G05650 118 / 9e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G066500
[exp]
763 / 0 AT5G06390 620 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
Potri.010G244900
[exp]
617 / 0 AT5G06390 580 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
Potri.008G012400
[exp]
601 / 0 AT5G06390 577 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
Potri.010G198250
[exp]
429 / 2e-149 AT5G06390 404 / 1e-139 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
Potri.019G008400
[exp]
422 / 3e-146 AT5G06390 414 / 5e-143 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
Potri.012G006200
[exp]
423 / 1e-145 AT5G06390 400 / 4e-137 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
Potri.019G120800
[exp]
44 / 7e-05 AT5G60490 124 / 2e-34 FASCICLIN-like arabinogalactan-protein 12 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013604
[exp]
562 / 0 AT5G06390 619 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
Lus10029353
[exp]
551 / 0 AT5G06390 600 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1)
Lus10016194
[exp]
438 / 4e-152 AT3G11700 492 / 5e-174 FASCICLIN-like arabinogalactan protein 18 precursor (.1)
Lus10021247
[exp]
260 / 1e-82 AT2G35860 301 / 8e-99 FASCICLIN-like arabinogalactan protein 16 precursor (.1)
Lus10036111
[exp]
43 / 0.0003 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02469 Fasciclin Fasciclin domain
Representative CDS sequence
>Potri.006G200300.1 pacid=42767128 polypeptide=Potri.006G200300.1.p locus=Potri.006G200300 ID=Potri.006G200300.1.v4.1 annot-version=v4.1
ATGGATTCTCACATCTATGGTGTCTCTAAGAAAACCCTTCTTCTCTTTACTCTTCTCTGTCTTTCCGTTTCCTCCATTTCTGCATTACCCCATCAGAATA
AAACTGGCAATAGTACGGGTACTGGTCAAATGATAAACTCCAACTCGGTGCTTGTTGCGCTTCTTGACTCGCATTACACCGAGTTAGCTGAGCTCGTTGA
AAAGGCTCTCCTTCTACAAACCCTTGAAGAAGCTGTTGGCAAACACAACATCACCATCTTTGCGCCAAGAAATGAAGCTTTAGAGCGTCAACTTGACCCC
GAATTCAAACGGTTTTTACTTGAACCCGGTAATCTCAAATCTCTCCAAACCCTTGTATTGTTCCACATTATCCCCCAACGGGTCGGATCCAATGACTGGC
CAGGTCACAAATCAAACCCCAGCAGGCACACCACTCTCTGCAACGATCATCTGCACTTGATCACCAAGAATTCAGGCAAAAAGGTTGTCGGATCCGCCGA
CGTGACCCGACCCGACGACGTGACCCGACCGGACGGTGTTATTCATGGCATTGAGCGGCTCCTAGTCCCACAGTCAGTCCAGGAAGACTTCAACAGGAGA
AGAAATTTGAGATCCATATCAGCTGTATTGCCTGAAGGAGCCCCGGAAGTTGACCCAAGAACCCACAGATTGAAAAAACCGGAACCACCAGTTCGGGCCG
GTTCACCGCCGGTTTTGCCCATTTATGATGCCATGGCTCCTGGCCCATCATTGGCTCCCGCCCCAGCTCCTGGACCCGGTGGACCTCACCACCACTTCGA
CGGAGAAAGCCAAGTTAAAGACTTTATACAGACACTACTACTCTACGGTGGCTACAATGAAATGGCTGATATTTTAGTGAACTTAACTTCATTAGCCACT
GAAATGGGCAGGTTGGTATCTGAAGGCTATGTGCTTACAGTTTTGGCACCAAATGATGAAGCCATGGCTAAGCTAACAACAGACCAGCTGAGTGAACCAG
GGGCACCAGAGCAGATTATTTACTACCATATAATACCTGAGTACCAAACTGAAGAGAGTATGTATAATGCTGTTAGGAGGTTTGGGAAAATAGGGTATGA
TACATTGAGGTTGCCACATAAAGTCGCGGCGCAAGAAGCTGATGGGTCGGTTAAGTTCGGGTCAGGTGATGGGTCGGCCTATTTGTTTGACCCGGATATC
TATACAGATGGGAGGATTTCAGTTCAAGGGATTGATGGGGTTTTGTTTCCTGAAGTTGAGAAAGAGAGTACTTCTGTTAAGAAATCCGTCAGCTCTGTTA
AGGTTGCCACTACCAAGCCAAGAAGAGGGAAATTAATGGAAGTAGCCTGTATAATGCTTGGAACTCTTGGACAGGACTCGCGTTTCACTACATGTCAGTG
A
AA sequence
>Potri.006G200300.1 pacid=42767128 polypeptide=Potri.006G200300.1.p locus=Potri.006G200300 ID=Potri.006G200300.1.v4.1 annot-version=v4.1
MDSHIYGVSKKTLLLFTLLCLSVSSISALPHQNKTGNSTGTGQMINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNEALERQLDP
EFKRFLLEPGNLKSLQTLVLFHIIPQRVGSNDWPGHKSNPSRHTTLCNDHLHLITKNSGKKVVGSADVTRPDDVTRPDGVIHGIERLLVPQSVQEDFNRR
RNLRSISAVLPEGAPEVDPRTHRLKKPEPPVRAGSPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFDGESQVKDFIQTLLLYGGYNEMADILVNLTSLAT
EMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKIGYDTLRLPHKVAAQEADGSVKFGSGDGSAYLFDPDI
YTDGRISVQGIDGVLFPEVEKESTSVKKSVSSVKVATTKPRRGKLMEVACIMLGTLGQDSRFTTCQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Potri.006G200300
[exp]
0 1
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Potri.010G244900
[exp]
1.00 0.9790
AT1G27210 ARM repeat superfamily protein... Potri.010G038900
[exp]
1.73 0.9389
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Potri.003G151700
[exp]
2.44 0.9574 POPTRKOR2,KOR1.3
AT5G61340 unknown protein Potri.015G060900
[exp]
4.58 0.9298
AT4G28500 NAC ANAC073, SND2, ... SECONDARY WALL-ASSOCIATED NAC ... Potri.017G016700
[exp]
7.21 0.9328
AT1G63910 MYB AtMYB103 myb domain protein 103 (.1) Potri.001G099800
[exp]
7.74 0.9324
AT1G49890 QWRF2 QWRF domain containing 2, Fami... Potri.001G295800
[exp]
8.24 0.9054
AT1G27920 MAP65-8 microtubule-associated protein... Potri.003G173300
[exp]
8.36 0.9146
AT4G39050 Kinesin motor family protein (... Potri.004G161100
[exp]
10.72 0.8994
AT1G24030 Protein kinase superfamily pro... Potri.010G095900
[exp]
11.22 0.9311

Potri.006G200300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.