Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35880 167 / 2e-46 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G25480 127 / 5e-32 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 126 / 1e-31 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT3G23090 107 / 2e-25 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G28646 96 / 9e-23 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G54460 98 / 2e-22 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G04630 94 / 3e-21 WDL1 WVD2-like 1 (.1.2.3) AT1G70950 85 / 2e-17 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01710 47 / 3e-05 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 43 / 0.0005 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066600 [exp] 685 / 0 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 149 / 7e-40 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.018G027500 [exp] 141 / 9e-37 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.008G162800 [exp] 128 / 2e-32 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 124 / 3e-31 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.005G055900 [exp] 115 / 5e-28 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.013G042800 [exp] 110 / 3e-26 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 87 / 7e-18 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 82 / 2e-16 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029355 [exp] 248 / 6e-76 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10016193 [exp] 232 / 3e-70 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002915 [exp] 138 / 6e-36 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10021223 [exp] 116 / 2e-28 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 114 / 3e-27 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10005533 [exp] 100 / 4e-23 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 99 / 6e-23 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 99 / 1e-22 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 97 / 3e-22 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002012 [exp] 91 / 1e-19 AT4G32330 141 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.006G200400.7 pacid=42768974 polypeptide=Potri.006G200400.7.p locus=Potri.006G200400 ID=Potri.006G200400.7.v4.1 annot-version=v4.1 ATGGAGGGTGACAATGCAGTTAAAACGAATGAGGAAACCATTGCTGAGGAAATTCATTCTGAAGCACCTGTTGTGGCACCAGAAAAGGAAGAAAAAAATG CTACCAATGGTGAAAGACCTCTAAAAGCCAATGAAACATCTAAGCATGTTGCCAAAACTGAAGGTCTTAATTCCTCTGGCATTGCAAGTGAAGGTGCAGC AAGTGTTTCTGAAAGAAAACTCTCAAATGCCTTAAAGGAACCTGCTCTGAGGAAAGGCACTGGTTCAAAGAACAGCAAATTGGCCAAGGATAAGCCTAAT GTGAAAGGCTCAGGTCCATTTTCTCATAGCCAGAGACCAATACTTTCTCAGAGTCTTTCATTTCCAGCAAAAGGTGTGCGAACTAATAATATGAGGAAGA GCATCGAGGGACACCCACTCAAAACTGCTGTCAAGCTTTCCCGGGATGAAGGAACAAAGGTGCAGGTTCCTTTTTCCAATGGATCAGTCACTTCAAGTCC CCGTTTCAACCGAGCCAACAGGCTTGCACCCACTGGAGCGAATTCAAAGGAATCAAATATTAATGGAAGTAAGACTTTAACTAAGCAGACTTCCTCCACA AGCAAGTCTAGCAGTCAACAGGCTGCGTCTGTGAAATCAAGTTCTTTGACTGAAGCTGCAAAGTGCCCTCCACCCCAGGTTTCTGAGTCTGCTGCTGATC AAAACTCAAAACCTGAGACAACCACATTTTCAAGCAAAGAAGAAGATGACACCCATTCCACAACTTCAAGTGCCACTCTTAGCGGGCGGAGAAGTAGCGG CTCTGGATTCTCCTTCAGATTGGAAGAACGTGCTGAGAAACGGAAGGAGTTCTTTTCAAAGCTTGAAGAGAAGATCCATGCTAAAGAAATAGAACAAACT AACTTGCAGGCAAAATCAAAGGAGAGCCAGGAAGCAGAGATCAAAAAACTGAGGAAGAGTTTGACATTTAAAGCTGCACCTATGCCTTGTTTTTATAAAG AGCCTCCTCCAAAAGTGGAACTAAAGAAGATACCGACTACTCGTGCAAAATCGCCGAAGCTTGGAAGGCGCAAGAGCTCTACCACTTCAATGAACAATTC TTTGGAAGATGTTGGATCTTCTTTTAGCCCACGAGCTTCTCACAGCCCACATCTGAACCAAGAATCAAGCAACCCAACCAAAGGAGCTCAGAGAAATGGT AACGTGGATAATGGTGCTTCAAAAACACCAATTAGCAAGTCCCAGCCTAAGCATCAGTCTCGCCAAATAACAGCCAATGGAATGGAAGGAAAGACTGTCA AGTCCAAAGCGAAGCTACCAGGAGCAGAGAGTCAAACCCAGAAAGCTAATGTCGAAAAAGTGGAAGTAAACGAGAATAACTCCATGAAAGTTCCTGTATG TGAGAATGGAATTGAGACCATGCCCGAAAACAACACTCCTCAGAACAATGGACCAGTTTTGTCCTCGTCCAATCCTGAGATTATGCTCCCTCATGTCACA GTTGGAGGGTGA
AA sequence Show only first row Show all	>Potri.006G200400.7 pacid=42768974 polypeptide=Potri.006G200400.7.p locus=Potri.006G200400 ID=Potri.006G200400.7.v4.1 annot-version=v4.1 MEGDNAVKTNEETIAEEIHSEAPVVAPEKEEKNATNGERPLKANETSKHVAKTEGLNSSGIASEGAASVSERKLSNALKEPALRKGTGSKNSKLAKDKPN VKGSGPFSHSQRPILSQSLSFPAKGVRTNNMRKSIEGHPLKTAVKLSRDEGTKVQVPFSNGSVTSSPRFNRANRLAPTGANSKESNINGSKTLTKQTSST SKSSSQQAASVKSSSLTEAAKCPPPQVSESAADQNSKPETTTFSSKEEDDTHSTTSSATLSGRRSSGSGFSFRLEERAEKRKEFFSKLEEKIHAKEIEQT NLQAKSKESQEAEIKKLRKSLTFKAAPMPCFYKEPPPKVELKKIPTTRAKSPKLGRRKSSTTSMNNSLEDVGSSFSPRASHSPHLNQESSNPTKGAQRNG NVDNGASKTPISKSQPKHQSRQITANGMEGKTVKSKAKLPGAESQTQKANVEKVEVNENNSMKVPVCENGIETMPENNTPQNNGPVLSSSNPEIMLPHVT VGG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35880			TPX2 (targeting protein for Xk...		Potri.006G200400 [exp]	0	1
AT2G40280			S-adenosyl-L-methionine-depend...		Potri.010G185000 [exp]	1.41	0.9525
AT4G36945			PLC-like phosphodiesterases su...		Potri.007G045200 [exp]	3.46	0.9496
AT2G35880			TPX2 (targeting protein for Xk...		Potri.016G066600 [exp]	4.24	0.9427
AT5G43150			unknown protein		Potri.010G088200 [exp]	5.47	0.9254
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G006500 [exp]	7.07	0.9271
AT4G01575			serine protease inhibitor, Kaz...		Potri.015G001800 [exp]	8.24	0.9294
AT2G17530			Protein kinase superfamily pro...		Potri.005G102100 [exp]	8.77	0.9212
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	8.83	0.9109
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	9.79	0.9016
AT1G28240			Protein of unknown function (D...		Potri.011G053000 [exp]	10.24	0.8996

Compare expression of checked genes

Potri.006G200400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.