Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CDPK5.6,CPK26
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04870 842 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 829 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT2G38910 767 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT4G35310 719 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 715 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G38230 706 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT1G35670 689 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G09570 682 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G23580 666 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G12180 647 / 0 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066700 [exp] 1091 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.008G014700 [exp] 894 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 887 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G065700 [exp] 796 / 0 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.006G199400 [exp] 787 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.004G207300 [exp] 733 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 728 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.T012800 [exp] 714 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.019G083200 [exp] 699 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013603 [exp] 875 / 0 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10021248 [exp] 872 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10028862 [exp] 850 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10008958 [exp] 820 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10015992 [exp] 783 / 0 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 777 / 0 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029346 [exp] 746 / 0 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10016200 [exp] 745 / 0 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10022986 [exp] 732 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10001384 [exp] 728 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.006G200600.3 pacid=42769109 polypeptide=Potri.006G200600.3.p locus=Potri.006G200600 ID=Potri.006G200600.3.v4.1 annot-version=v4.1 ATGGGGAATAATAATTGTATTGGATCAAGGGTTTCCAGGGATGGTATCTTTCAAACAATCTCTTCTTCTGTTTGGTGGGCTCGATCGAAGGATTGCTTGA TCACTTATAATAAGAAAGAAAATGTTGATGGGTTGTCCTTGAATAGAGTGCAAGAACCTCCTTTCCATGCTCAAAACAAGCCTCCGGAGCAAATGAAGAT AGCTAAGGAAGAGATAATTAATCAAGTACCATCGCCTCCAAAACCAAAGGAAAATGCAACTGTAGCATCGGAGATTATCATGGAGGTTGAAGAGAGTAGA CCGGCAAAGCCAGCAAGTGACAAGGAAGTGAAAAAACCAGCAGAGCCCACGAGACCAAGTAAGCCTCTTGTTACGAGGACACCAAGTGCAGGGCTGCAGG TAGATTCAGTGTTGAAGACAAGAACCGGTCATTTGAAGGACTACTACAACTTGGGGAGGAAGCTTGGCCGTGGTCAATTTGGGACAACTTTTCTTTGTGT GGAAAAAGCAACTGGAAAAGAGTATGCTTGCAAGTCGATTGCGAAAAGGAATTTATTGACAGCAGATGATGTGGAGGATGTAAGGAGGGAAATTCAGATA ATGCATCACCTGGCAGGGCACCCTAATGTTATCTCTATCAACGGGGCGTACGAGGATGCTGTGGCAGTTCATGTTGTGATGGAATTGTGTGCTGGTGGTG AGCTCTTTGATAGGATTATTAAGCGAGGACATTACACAGAAAGAAAGGCAGCTCAACTCACTAGGACTATAGTTGGTGTTATAGAAGCCTGCCATTCCTT AGGGGTCATGCATCGGGATCTCAAGCCTGAGAACTTTCTCTTTGTCAATGAGCGTGAGGATTCACCTCTCAAGGCAATAGATTTTGGATTATCAGTATTC TTCAAGCCTGGGGAGATTTTAAATGATGTGGTTGGAAGCCCATATTATGTTGCACCTGAAGTTCTGCGCAAGCGCTATGGTCCAGAAGCAGATGTTTGGA GTGCTGGAGTGATGGTTTATATCCTCTTATGTGGGGTACCTCCATTTTGGGCTGAGAAGGAACATGACATATTTGAGGAGGTCTTGCATGGTCATCTGGA TTTCACATCAAATCCCTGGCCTAAGGTCTCTGCAAGTGCAAAAGATTTGATCAGGAGAATGCTTGTCAGAGACCCTAAGAAGCGACTTACTGCCCATGAA GTTCTTTGTCACCCTTGGGTTCGTGATGATGGGGTGGCTCCAGACAAGCCTCTAGATCCTGCAGTATTAAGTCGCTTGAAGCAGTTTTCTGCAATGAACA AGATTAAGAAAATGGCTCTTAGAATCATTGCCGAGAACCTATCTGAAGAAGAAATCGCTGGCTTAAAAGAGATATTTAATATGATAGACACAGACAATAG TGGTCAAATTACTTTCGAAGAACTCAAAGTAGGACTGAGAAGATTTGGTGCGAATCTCACCGAGGCTGAAATTTACTCTCTACTGCGAGCAGCAGATGTT GATAACAGTGGCACAATAGATTACAAGGAGTTCATAGCTGCCACATTACATTTACACAAAGTTGAAAAGGAAGATCATCTATTTGCAGCCTTCTCATATT TTGACAAGGATGATAGTGGCTATATCACCATAGATGAACTCCAACAAGCCTGTAATGAATTCGGCATGGATGACGTTCACTTAGAAGAAATGATTCGAGA AGTTGATCAAGATAATGATGGTCGCATAGATTACAATGAATTTGTGGCCATGATGCAGAGAGGCAACACCGAATTGGTTAAGAACGGTTTACAGGGTAAG AATTTTAGCATTGGATTTAGGGAGGCACTATCAGTCTATTAA
AA sequence Show only first row Show all	>Potri.006G200600.3 pacid=42769109 polypeptide=Potri.006G200600.3.p locus=Potri.006G200600 ID=Potri.006G200600.3.v4.1 annot-version=v4.1 MGNNNCIGSRVSRDGIFQTISSSVWWARSKDCLITYNKKENVDGLSLNRVQEPPFHAQNKPPEQMKIAKEEIINQVPSPPKPKENATVASEIIMEVEESR PAKPASDKEVKKPAEPTRPSKPLVTRTPSAGLQVDSVLKTRTGHLKDYYNLGRKLGRGQFGTTFLCVEKATGKEYACKSIAKRNLLTADDVEDVRREIQI MHHLAGHPNVISINGAYEDAVAVHVVMELCAGGELFDRIIKRGHYTERKAAQLTRTIVGVIEACHSLGVMHRDLKPENFLFVNEREDSPLKAIDFGLSVF FKPGEILNDVVGSPYYVAPEVLRKRYGPEADVWSAGVMVYILLCGVPPFWAEKEHDIFEEVLHGHLDFTSNPWPKVSASAKDLIRRMLVRDPKKRLTAHE VLCHPWVRDDGVAPDKPLDPAVLSRLKQFSAMNKIKKMALRIIAENLSEEEIAGLKEIFNMIDTDNSGQITFEELKVGLRRFGANLTEAEIYSLLRAADV DNSGTIDYKEFIAATLHLHKVEKEDHLFAAFSYFDKDDSGYITIDELQQACNEFGMDDVHLEEMIREVDQDNDGRIDYNEFVAMMQRGNTELVKNGLQGK NFSIGFREALSVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.006G200600 [exp]	0	1	Pt-CDPK5.6,CPK26
AT5G13250			RING finger protein (.1)		Potri.003G164800 [exp]	3.16	0.7977
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.006G065900 [exp]	5.19	0.6855	Pt-CBP1.3
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.014G050000 [exp]	7.61	0.7690
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.008G038200 [exp]	15.19	0.7600	Pt-PAL.2,PAL2
AT4G18425			Protein of unknown function (D...		Potri.004G049000 [exp]	16.88	0.6943
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.011G007600 [exp]	22.24	0.7160
AT2G40410			Staphylococcal nuclease homolo...		Potri.008G074800 [exp]	23.06	0.7444
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	28.61	0.7287	ATHB.11
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Potri.011G044500 [exp]	29.39	0.7223	BFN1.1
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	32.98	0.6799	GLT1.2

Compare expression of checked genes

Potri.006G200600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.