Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06400 1132 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 227 / 5e-61 PGR3 proton gradient regulation 3 (.1) AT3G06920 185 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 179 / 3e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G59900 166 / 5e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G19290 161 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74750 159 / 9e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 159 / 1e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT3G49730 156 / 3e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 152 / 7e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264800 [exp] 232 / 1e-62 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.015G105400 [exp] 196 / 3e-51 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 178 / 8e-46 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 179 / 9e-46 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 168 / 1e-42 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 168 / 2e-42 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 161 / 8e-41 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 162 / 1e-40 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G234500 [exp] 161 / 2e-40 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021250 [exp] 1203 / 0 AT5G06400 988 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013602 [exp] 900 / 0 AT5G06400 820 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 220 / 8e-59 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 191 / 1e-49 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037968 [exp] 179 / 1e-45 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 172 / 5e-44 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 172 / 1e-43 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 164 / 6e-41 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 162 / 6e-41 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026884 [exp] 157 / 2e-39 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.006G200800.1 pacid=42770310 polypeptide=Potri.006G200800.1.p locus=Potri.006G200800 ID=Potri.006G200800.1.v4.1 annot-version=v4.1 ATGAGGCAGACATTCAAACTCCAATCTTTAAGCTATAAACCTCTTAATTCCCAGCTCTCCGCATACCAAATTTTTCACTTTTCCAGCCTCTCTAAATCAT CTAAACCCTCCCATTCGAAGAAAACTCAAGAACCCCAATTGAAAGGCCATGCAGAAACTAAAACCATTAATTCACTCTTTAAAGAGATAACTGAGATCTT GGGTGCTGATGTTGTGATCCCAGATAGAACTCCATATGGGTTTTTTATACCTAGAGAAACCCATGTGGGAGATAACGAGATAAGTGGAGAATTCAAGTAT CGCGAAGAAGGTGTTTGTGGAAATGCTGAACTGAATAATGGGTTGCAAAAGGAGGGGTCTTTGTTGGCTTTCGGAGATATAAAGGTGGGAGCTTTGAATG AAACTGACGTTAGTGCTGTAGTTCATGAGATTACTGGGATTGTTCGTGCAGAAAATTGCACAGCTTCAATGGAGGAAAGGCTAGATAAAGTGGGGTTTCA GCTAGAACCAGAGATTGTTGAGAAAGTATTGAAGAGGTGCTATAAAGTGCCACATTTAGCTTATAGATTCTTTAATTGGGTGAAGACGAAAGATGGGTTT TGTCATACAACGAAGACTTATAATACCATGTTGTATACAGCTGGGGAAGCCAGAGAGTTCTCGGTGGTGGATGTTTTACTGGAGGAGATGGAGAAGTACT CTTGCGAAAGGGATATTAAGACTTGGACTATTCTTATTCGACAGTATGGGAAGGCAAAGTTGATAGGCAAAGCCTTGTTGGTCCATGAGAAGATGAGAAA GTCTGGGTGTGAACCTGATGTAGAAGTTTATGAAGTGACGTTGCATTCACTTTGTGATGCTGGAAAAGGTGAAATCGCTTTGGAAATTTACAAGGAAATG GTGCAAAGGGAAATGGAACCTAACTTAAGTTTGTACAAGATGTTATTGAATTGCTTGGCAAAGTCAGGAGATGTTAGTGCTGTTCAATCGGTGGCTGATG ACATGATTAGGGTCTCTCAGATTCCGGAGCATGATGTTCATGTTTGTGTCCTGAAGAGCTATTGCGTGGCTGGGAGAATTAGAGAAGCTTTAGAATTGAT TCGTGATCTCAAGAATAAAGAAATACAGCTTGATTATGAAGTTTCCGAGACCCTGGTGAAAGGACTAAGCAGGGCTAATAGGATTGCAGATGCTCTAGAA ATTGTTGAAATTATGAAGAGAAAAGATTTTGTTGATGGGAAGGTTTATGGGATCATCATCAATGGGTACTTGAGGAGAAATGAACTTTCTAAGGCACTCG ATCTGTTCCAGAGCATGAAAGAGTTTGGACATTTGCCTACTACTTCTACCTATACAGAGCTAATGCAACACCTCTTCAGATCAAATGAGTATCAGAAATG CTGCGAGCTGTATGATGAGATGCTGGAAAGAGGAGTTGAGATAGACAGTGTGGCAGTTATGGCCATTGTTGCAGGTCATGTTCGCCAAGACCATATATCT GAAGCATGGGAAGTGTTTGAGACTATGGAGGATAAGGGAATCAAGCCGACTTGGAAATCTTATTCAATATTTATCAAGGAGCTTTGCAAAGTTTCGAGAA CAGATGAAATTATCAAGGTTTTGGGGAAAATGCAGGCTTCCAAGATGTTTATTTGTGATGAAATATTTGAGTGGGTTATATCTTGTATGGAGAGAAAGGG AGAGATGGACAACATTAGAAAAGTAAAGCAGATGCATAGAATCTGCAGACTTCATTCGCTAAATGATGAAGTATCTAGAAATGATTTGTCCAGGGAAGAG GAGCTCCATGTTGACTCGAACTGTAATGAATCAGTGCAAGGAAGGGTGGATTGGAACTCGGTGAAGCCACTTTCAAAGGCTTACGATGAGCAGGACTTGC AAGAAGTTCTGAGGATATTATCATCCTTGGAGGATTGGCCCATCATTCAAGATGCCCTGGAGAAATGCACCATTCAGTTCACACCAGAACTTGTTGCCGA GACCTTACGCAATTGCGGTATGCATGGAAATGCTGCATTGCATTTCTTTGCGTGGGTAGGAAAGCAAAATGGTTTTTGCCAAACTACAGAAACGTACAAC ATGGCAATGAAAGTTTCAGGTCGTGGGAAAGATTTCAAGCACATGAGAAGCCTCTTTTATGAAATGAGGAGAAGGGGCTTCTTAATACCACCAGATACAT GGGCAATCATGATAATGCAATATGGTCGAACAGGTCTAACGGAGATTGCTCTTAAGATATTTGGTGAGATGAAAGCTAGCGGTTGTAATCCAAATGACAG CACTTACAAGTACTTGATAATTTTTCTTTGTGGAAGAAAAGGAAGAAAGGTTGATGAAGCCATTAAAATATTCCGGGAGATGATTCGTGCTGGACATGTC CCTGACAAAGAGCTGGTTGGAACGTACCTCTGCTGTTTATGTGAAGTTGGCAAATTGTTGGAAGCCAGAAAATCCGTAGACTCTCTTTGTAAAGCTGGTT TTACAGTTCCTGCTAGTTACTCCTTGTACATTAGAGCGCTTTGTCGAGCTGGAATGTTAGAAGAAGCTTTATCATTAGTAGACCAGGTTAGCACCGAGAA AACTACGTTGGATCGGTATACGCATGCAAGCCTTGTGCATGGCCTATTACAGAAGGGACGACTAGAAGAGGCTTTAGCTAAGGTGGACTCTATGAAGCAG GTAGGCATTAATCCAACCGTCCATGTTTACACATCCTTGATAGTTCATTTCTTCAGGGAAAAGCAGGCATCAAAAGCGTTGGAAATTTTCGAAAGCATGA AACAGGAGGGTTGTGAGCCAACAATAGTTACATATTCGGCATTGATTCGCGGTTACATGGACACGGAAAATGTCATTGAAGCTTGGAACGTCTTCCATTC TCTCAAAACGAAAGGGCCTGCGCCTGATTTTAAGACTTATTCAATGTTTCTTAGCTGTCTATGTAGGGCAGGAAAATCTGAAGAAGCCCTTCAGCTTCTG TCAGATATGGTGGATAATGGGATTGTTCCCAGTAATGTTAATTTTAGAACTGTTTTCTTTGGGCTAAACAGAGAAGGCAAGCAAAGTTTAGCTCAAACTG TATTGCAAAAGAAGTGGGCTTTAACCAGTAAACGTAAATTTTCTTAA
AA sequence Show only first row Show all	>Potri.006G200800.1 pacid=42770310 polypeptide=Potri.006G200800.1.p locus=Potri.006G200800 ID=Potri.006G200800.1.v4.1 annot-version=v4.1 MRQTFKLQSLSYKPLNSQLSAYQIFHFSSLSKSSKPSHSKKTQEPQLKGHAETKTINSLFKEITEILGADVVIPDRTPYGFFIPRETHVGDNEISGEFKY REEGVCGNAELNNGLQKEGSLLAFGDIKVGALNETDVSAVVHEITGIVRAENCTASMEERLDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGF CHTTKTYNTMLYTAGEAREFSVVDVLLEEMEKYSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIYKEM VQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADALE IVEIMKRKDFVDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHIS EAWEVFETMEDKGIKPTWKSYSIFIKELCKVSRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQMHRICRLHSLNDEVSRNDLSREE ELHVDSNCNESVQGRVDWNSVKPLSKAYDEQDLQEVLRILSSLEDWPIIQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYN MAMKVSGRGKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLCGRKGRKVDEAIKIFREMIRAGHV PDKELVGTYLCCLCEVGKLLEARKSVDSLCKAGFTVPASYSLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQ VGINPTVHVYTSLIVHFFREKQASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLL SDMVDNGIVPSNVNFRTVFFGLNREGKQSLAQTVLQKKWALTSKRKFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06400			Pentatricopeptide repeat (PPR)...		Potri.006G200800 [exp]	0	1
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	2.23	0.9511
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	3.16	0.9380
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	4.00	0.9408
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.003G204100 [exp]	4.89	0.9297
AT3G11110			RING/U-box superfamily protein...		Potri.008G071000 [exp]	5.09	0.9269
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	5.47	0.9296
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.018G085800 [exp]	6.00	0.9364
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	6.48	0.9405
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	6.92	0.9402
AT1G48570			zinc finger (Ran-binding) fami...		Potri.015G038200 [exp]	7.41	0.9295

Compare expression of checked genes

Potri.006G200800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.