Plant FIBer expression Database

Potri.006G201000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06440 391 / 3e-129 unknown protein
AT3G11720 334 / 2e-106 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G067000
[exp]
704 / 0 AT5G06440 370 / 6e-120 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029362
[exp]
453 / 4e-155 AT5G06440 348 / 3e-117 unknown protein
Lus10021251
[exp]
452 / 1e-150 AT5G06440 372 / 3e-122 unknown protein
Lus10013601
[exp]
443 / 4e-147 AT5G06440 370 / 2e-121 unknown protein
Lus10029361
[exp]
395 / 9e-130 AT5G06440 331 / 8e-108 unknown protein
Lus10016186
[exp]
370 / 1e-120 AT5G06440 306 / 1e-98 unknown protein
Lus10016185
[exp]
175 / 8e-50 AT3G11720 136 / 1e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.006G201000.5 pacid=42767867 polypeptide=Potri.006G201000.5.p locus=Potri.006G201000 ID=Potri.006G201000.5.v4.1 annot-version=v4.1
ATGGGGAAGAGTGGAAAGATCTCTCAATACAGAGAGAGGCTGGACCAGACACTGGCATCCCCTGAACTGACAAATCTTGACGCACTTAAAACCCTTATCA
GGAATCAACTTGTTCACTCTTCGCTTGATGAAACCGAAGGATGCAGCGACAATTTAATAGAAAATAGAACTAAACATGTGTCCTCTTTTCTTGACATGTT
GAGGAGTGCTTCTGTAAGTGAAAATGAGGTGTCAAGAACCAGTGAGACATCACATGGTGGATGGAAAATAAAAGAGGATCATGAAGAGTTCCGTGTTATG
TATCGCCCAGGACCTGAGGGTACTCCCTTTCATTCATTACTTGTCGAAGGTTATGTTGATGGAACTATCGATACTTGCTTATGCGTCTCTTGGGAGGCGA
CACTCTACAGGAAATGGTGGCCCCAGTATAGTTTCCCACCTTTTAAAATCACCATTTGTGAATGCTTGCAAAAGATCCGGATCAGTGAACAGATATCTCT
AGTGAGGGTGAAGGTTACATGGCCGATGACGGCTAGGGAGGCTGTTGTGCACTATGTTTTGTTTGAACACCTCCAAGATGGTCTGGTTGTTGTTATCATA
AGCACGATCTCGGATTTGGAGGGCATTGATAAAAATACCCATGGATTTTCAAAAGATGGAATCCCTGAAGCAAAGGATGTGGTAAGGATTGATATGATGG
GTGGCTTTGCCATCCAAAAAGTGACCCCAGGAAGAAGTTATTTTCGGACAATAGCAAATATGGATTTGAAGCTGGATTTTGTCCCTCCATCTCTCATGAA
CTTCATCACAAGGCAGCTCGTTGGCAATGGTTTCACACTCTATCAGAAGGCAGTGGCTTCTGTGTCTAACCATGATGAAGACTACAGAAAGGCTTTGGAA
GCTCCAATGTATGCTCGAATACGCGAGGCTCTTTATTCTACTGAAAACGCAAATGAGGCCATGGAATGGAAAGAGCCTAAAGCAGATGCTTGCCTTCTAC
AGCAAGAGCATTCTGCTGAAGATATAAAAGAAAACTTGGGAGATGTTGAACTGAATATTCTTGGAGACAATGATGCAAGTGAAGCTTCTCCAGAAAATGC
ACAAGTTGTGGTAAACAAATCCTTTGGTGAGATCAAGGAAGAAAATAATCAAGAAAGCAGACACTTGAAGGATGAAAGCTTGGGAGTTATGGAACTGAAT
AGTCATGGAGATGATGGTGCAAGCGAAGCTTTTCCAGACAATGCACCACTTATGGACAATAAATCCTTTGGTGATATCAAGGAAGAAAAGAATCCAGAAA
GCAGACACTTGAACGATGGAATGCGAGGGATGGAGCAGAGAGTTCATTGCAATGACCATGGAAATGAAAGTTGGCGAAACATTGCACTTGCTACAGGTAG
GAAAACTTTTATTGAGATTGAGGAAGAAGAAAGTGAAGATAGCAGACGATTAATGAGGGATTGCAGAGTTATAGGTCAAACTTCAAGCAAAAATATTTCC
CGAAAGAGTCCTGGAAACTGTACAAGGAATATACGTATCAGTTCTGATGTAGGGAGAGCTTTAGAAACTCTAGAGAAGGCCATTTCTGTGGTCCGGGAAT
ACGGTAATTCTCTTACCAGGTCTTTCTCTAGAAAAACAAATGAAGAAAATAAAAACCTTGAAAAGGATGCAGAAAATGATCCAACTCATTTACAAGACAG
TGGAGGCCGTTCAAATGCTGAGGTCTCTGTTGAAGCATCCAATAAAGGAAAACGTGTTGGGAGGAGTTCATCCAGCAATAGCTTCAGCAACCGTGAAATC
AGGCGTGCAGGTTCAAGGGAAACAAGCCATAACAAGATAACGCCTGCATCACCAGATCAATACATTTCAATTCCTAGTGAAACTCACCATGTTGCTTTAT
ATTCTTCTGAAAATGGGAAAGATGAAACAACAGAGGTAAGAGCTATGGACCTAACCACGCAAGGCGACAAGCAAATGAGCCTTGAGGTAAATGGCATCCA
TGAAAATGTTTTCATTGAAGGGAAGAAACTTACTCGGCAAACAAATTATAGATACTGTTGTTTTGGTTCCACATACGAGTAG
AA sequence
>Potri.006G201000.5 pacid=42767867 polypeptide=Potri.006G201000.5.p locus=Potri.006G201000 ID=Potri.006G201000.5.v4.1 annot-version=v4.1
MGKSGKISQYRERLDQTLASPELTNLDALKTLIRNQLVHSSLDETEGCSDNLIENRTKHVSSFLDMLRSASVSENEVSRTSETSHGGWKIKEDHEEFRVM
YRPGPEGTPFHSLLVEGYVDGTIDTCLCVSWEATLYRKWWPQYSFPPFKITICECLQKIRISEQISLVRVKVTWPMTAREAVVHYVLFEHLQDGLVVVII
STISDLEGIDKNTHGFSKDGIPEAKDVVRIDMMGGFAIQKVTPGRSYFRTIANMDLKLDFVPPSLMNFITRQLVGNGFTLYQKAVASVSNHDEDYRKALE
APMYARIREALYSTENANEAMEWKEPKADACLLQQEHSAEDIKENLGDVELNILGDNDASEASPENAQVVVNKSFGEIKEENNQESRHLKDESLGVMELN
SHGDDGASEAFPDNAPLMDNKSFGDIKEEKNPESRHLNDGMRGMEQRVHCNDHGNESWRNIALATGRKTFIEIEEEESEDSRRLMRDCRVIGQTSSKNIS
RKSPGNCTRNIRISSDVGRALETLEKAISVVREYGNSLTRSFSRKTNEENKNLEKDAENDPTHLQDSGGRSNAEVSVEASNKGKRVGRSSSSNSFSNREI
RRAGSRETSHNKITPASPDQYISIPSETHHVALYSSENGKDETTEVRAMDLTTQGDKQMSLEVNGIHENVFIEGKKLTRQTNYRYCCFGSTYE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06440 unknown protein Potri.006G201000
[exp]
0 1
Potri.010G002600
[exp]
1.00 0.8180
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Potri.008G183600
[exp]
6.48 0.8072
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Potri.008G045300
[exp]
8.94 0.7796
AT3G05990 Leucine-rich repeat (LRR) fami... Potri.008G150200
[exp]
18.16 0.7052
AT1G80490 TPR1 TOPLESS-related 1 (.1.2) Potri.018G023900
[exp]
19.07 0.7797
Potri.012G052502
[exp]
21.21 0.7983
AT1G78940 Protein kinase protein with ad... Potri.004G170943
[exp]
22.36 0.7488
AT1G79740 hAT transposon superfamily (.1... Potri.018G135702
[exp]
31.93 0.7684
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.005G004600
[exp]
32.32 0.7665
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.008G185400
[exp]
36.74 0.7347

Potri.006G201000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.