Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22030 815 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G40930 625 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G10590 622 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT4G10570 613 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT1G32850 601 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT5G46740 95 / 1e-19 UBP21 ubiquitin-specific protease 21 (.1) AT4G31670 84 / 2e-16 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 82 / 5e-16 UBP19 ubiquitin-specific protease 19 (.1.2) AT5G10790 82 / 9e-16 UBP22 ubiquitin-specific protease 22 (.1) AT2G32780 82 / 9e-16 ATUBP1 ubiquitin-specific protease 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G214800 [exp] 932 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G033800 [exp] 665 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 651 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G449000 [exp] 643 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G152500 [exp] 631 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.016G067400 [exp] 586 / 0 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.018G123200 [exp] 95 / 8e-20 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1) Potri.018G017000 [exp] 93 / 3e-19 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G009500 [exp] 89 / 8e-18 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021253 [exp] 997 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 987 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013369 [exp] 879 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 857 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10027289 [exp] 652 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10033243 [exp] 628 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10038994 [exp] 617 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10017343 [exp] 615 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 598 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 397 / 6e-124 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G201100.2 pacid=42767068 polypeptide=Potri.006G201100.2.p locus=Potri.006G201100 ID=Potri.006G201100.2.v4.1 annot-version=v4.1 ATGACCCGTTTATCAGAGAAACTTCATCTCTTACACATCATAATCAAAATCTCTCAATTTTCTCTCTCTACTCTCAATCTCTTGAAAGCCCTAACTTTCA AAACCCTAACTTTTATTCCATCTTCAATTATGGGGGAGGATTTCTTCTCTTTCCACAACTCCAACACTGATGATTCTTCAATCTTCGACTTGGATTACGA TAACACCCGCTCCTCCGCCGCCGCCGCCTCTTCCTCCGCTTCTGGTTTCTTCAGTTCTACTCTTTACCGTGGTTGGTTTAGTAACGATGACGATGATAAT GATTTTGACAAGCTTTACTTGGTTCCTTATAGGTGGTGGAGTGAGGTGGAAACTGGTGGTGAACAAGTAGGAGTTTTGTACAATGTGATATCGAACTTTG GTGGTGATGATGCAGAGATTGTACTTGATTTTAGGAAGGAAGAAGGTTCTGAGAGGAGTGAGGATACTGAAGAAGGGTTTTCTGGCCGTGAGTATGCTAT AATCTCTGGAAGAATGTGGTTACAGGCGCTTAAACGGCATAATGATTCTAAAGGAGTAATGAAGGTTGTTAGTGGCTCTTTTATTGCTGAAGATTATTCA CAGGATGTGTTTCCCTTACAAATAAGGCTTTCAGTTTCTAGGGAAACAAATTCTTTGGTTGTGAAGATCAGCTCAAAGGACAATCTAGTTTCTTCTTACA GAAGAGCTTGCAATATTTTTGCTCCCAAATCTAAGCTGTTGCATATATGGGACTTCTCAGGGCAGACAACCCAATTTCTCATCGATGATAAGATCAATCT GCCTAATGATACCCTGGGAGAACAAGGCAAAGAGATTACTCTTGAATTGCAAGCCTATGGATTTTCAGATTCTATGACTGTTAGAGATGAAAACTTTGAT GAGATGGTGGAGATGGAGACTTCTTTTGAATCTGGTTCTGTTAAAATGAATGGGTGCACTGACCATGTGCGCTCTTATTCGTCACTAAGGAACTCACAAT CTGGGAGTGGCTTTAGGGTATTTGGTTACCTGGGTTTGAGGGGATTGCAGAATCTTGGGAATACATGTTTCATGAATAGTGCAATTCAGTGCTTGGCTCA CACCCCAAAGCTAGTTGACTATTTTCTCGGGGACTATGGAAAAGAGATAAATCAGGAAAATCTATTAGGGACAAAGGGGGAGCTTGCTTTAGCATTTGGG GATTTGCTAAGTAAACTATGGACACCACGAGATACCCCAGTGGCTCCTGCAATATTCAAGCGAAAACTAGCAGATTTTGCTCCTCAATTCAGTGGCTACA ACCAGCATGATTCGCAAGAGTTTCTTTCTTTTTTGTTGGATGGACTCCATGAAGATTTGAATCGTGTAAAGTCCAAGCCATATATAGCCATTAAAGATGC AGAGGGTCGCCTAGATGAAGTGGTAGCAGAGGAATATTGGAGGAATCACCTGGCTCGCAATGACTCGATCATAGTTGATTTGTGCCAAGGTCAGTATCAG TCAACACTGGTTTGCCCTGCTTGCAACAAGAAGTCTGTCACATTTGATCCATTTATGTACTTATCACTGCCATTACCTTCAACAACAATGCGGACTATGA CTTTGACTGTCCTGAGCACTGATGGGATGAATTTACCAACCCCAATTACTGTAACCGTGCCCAAATGTGGGAGGCAAAAAGATCTCATTGAGGCCTTGAG CATTGCTTGTTCTTTGAGAAATGATGAAATGCTGATGGTGGTTGAGATATACAAGAATAGAATTTTTCGTCGCCTTACTGAGCCATCTGACTCGGTAGCC TTGATCAGAGATGAAGACAAACTTGTTGCTTACCGGTTACTAAAAGATAACAGAAATTCACCCATGGTTGTCTTTATGCATGAAAGGGTGGAAAGGCCTT GTGAATTTGAGAGAGCAATACCAAATCTGAAGTTATTTGGCATTCCTTTTGTAGCAAGATTAGAGAATCTTTATACTGGATTTGATCTCCATAAACAATA TCTGAAATTACTAAGCCCACTTCTTATGCCTGCTGATGATGCACTCAATGATTATGATGATGTGGGAATCACAACTAATGAAGATTCTACAATGGAGGAT GTAGTTTGCCCTACAATCTCGGACAGTAATACAGGCTCAGACACTGGAACAGAGGATGACCAGTGTTCCAGCTCTGATTTTCAATTCTATTTGAAAGATG GAATGCGATCAACAGAGATAAAGATGAATGAGCCGTTACCAGTCCCAAAATTTAGCGATAACTTGGAGGTCTATGTAACTTGGTCGGAAAGTATGATTGA GAAGTATGATACATGCCTTCTCAGCTCGTTGCCAGAGGTTTTAAAGCCCCAGTTATATGCTAGGAGGCCTCAAGAGTCTGTTTCTTTATATAAATGCCTT GAAGCTTTCTTGAAAGAAGAGCCTTTAGGACCAGAAGACATGTGGGATTGCCCCAGCTGCAAGAAGCCTCGGCAGGCTAGGAAAAAGTTAGACCTTTGGA GATTGCCTGAAATCTTGGTTGTTCATTTGAAGAGGTTCTCATACAGTCGTTATATTAGGAACAAGTTGGAAACATATGTGGACTTCCCAATTGATGATTT TGATCTTTCGACCTACACTTCCAAGAAGGACAGCCAGTTTTCCAATCATTATGTATTGTATGCAATAAGCAATCATCATGGAGGCATGGGATGTGGTCAC TATGATGCCTTTATTGACCTTGGGTATCGCAAATGGTACGAGTTCGACGACAGCCGTGTTAGTCCTGTTAGTGAGGATGATATTAAAACATCAGCTGCCT ACGTACTTTTCTACAGGAGAGTTGCATAA
AA sequence Show only first row Show all	>Potri.006G201100.2 pacid=42767068 polypeptide=Potri.006G201100.2.p locus=Potri.006G201100 ID=Potri.006G201100.2.v4.1 annot-version=v4.1 MTRLSEKLHLLHIIIKISQFSLSTLNLLKALTFKTLTFIPSSIMGEDFFSFHNSNTDDSSIFDLDYDNTRSSAAAASSSASGFFSSTLYRGWFSNDDDDN DFDKLYLVPYRWWSEVETGGEQVGVLYNVISNFGGDDAEIVLDFRKEEGSERSEDTEEGFSGREYAIISGRMWLQALKRHNDSKGVMKVVSGSFIAEDYS QDVFPLQIRLSVSRETNSLVVKISSKDNLVSSYRRACNIFAPKSKLLHIWDFSGQTTQFLIDDKINLPNDTLGEQGKEITLELQAYGFSDSMTVRDENFD EMVEMETSFESGSVKMNGCTDHVRSYSSLRNSQSGSGFRVFGYLGLRGLQNLGNTCFMNSAIQCLAHTPKLVDYFLGDYGKEINQENLLGTKGELALAFG DLLSKLWTPRDTPVAPAIFKRKLADFAPQFSGYNQHDSQEFLSFLLDGLHEDLNRVKSKPYIAIKDAEGRLDEVVAEEYWRNHLARNDSIIVDLCQGQYQ STLVCPACNKKSVTFDPFMYLSLPLPSTTMRTMTLTVLSTDGMNLPTPITVTVPKCGRQKDLIEALSIACSLRNDEMLMVVEIYKNRIFRRLTEPSDSVA LIRDEDKLVAYRLLKDNRNSPMVVFMHERVERPCEFERAIPNLKLFGIPFVARLENLYTGFDLHKQYLKLLSPLLMPADDALNDYDDVGITTNEDSTMED VVCPTISDSNTGSDTGTEDDQCSSSDFQFYLKDGMRSTEIKMNEPLPVPKFSDNLEVYVTWSESMIEKYDTCLLSSLPEVLKPQLYARRPQESVSLYKCL EAFLKEEPLGPEDMWDCPSCKKPRQARKKLDLWRLPEILVVHLKRFSYSRYIRNKLETYVDFPIDDFDLSTYTSKKDSQFSNHYVLYAISNHHGGMGCGH YDAFIDLGYRKWYEFDDSRVSPVSEDDIKTSAAYVLFYRRVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.006G201100 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.010G219600 [exp]	3.60	0.8724
AT4G24200			Transcription elongation facto...		Potri.002G020000 [exp]	4.00	0.8526
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	5.65	0.8607
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.012G136100 [exp]	8.48	0.8402
AT1G77220			Protein of unknown function (D...		Potri.005G188200 [exp]	10.14	0.7594
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	10.53	0.8606
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	13.03	0.8489
					Potri.013G133550 [exp]	13.78	0.8001
AT4G39420			unknown protein		Potri.007G078650 [exp]	15.87	0.8447
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	16.73	0.8173

Compare expression of checked genes

Potri.006G201100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.