Plant FIBer expression Database

Potri.006G201200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11760 817 / 0 unknown protein
AT5G04860 620 / 0 unknown protein
AT2G10560 236 / 9e-72 unknown protein
AT2G25460 130 / 2e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G067600
[exp]
1334 / 0 AT3G11760 803 / 0.0 unknown protein
Potri.010G244100
[exp]
803 / 0 AT3G11760 657 / 0.0 unknown protein
Potri.008G015700
[exp]
798 / 0 AT3G11760 665 / 0.0 unknown protein
Potri.018G027200
[exp]
311 / 3e-96 AT3G11760 327 / 5e-103 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021254
[exp]
999 / 0 AT3G11760 793 / 0.0 unknown protein
Lus10013598
[exp]
938 / 0 AT3G11760 759 / 0.0 unknown protein
Lus10016183
[exp]
787 / 0 AT3G11760 771 / 0.0 unknown protein
Lus10029364
[exp]
767 / 0 AT3G11760 733 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0154 C2 PF10358 NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence
>Potri.006G201200.1 pacid=42768550 polypeptide=Potri.006G201200.1.p locus=Potri.006G201200 ID=Potri.006G201200.1.v4.1 annot-version=v4.1
ATGGTGGTCAAAATGATGAGGTGGCGGCCATGGCCACCGCTGGTTTCGAAGAAGTACGAGGTGAGGCTCGTTGTTCGAAGGATGGAGGGTTGGGATGTAG
TGCGGGAAGCTGTAGCTGCTGCACCTGGGACATCTTCAGGAGGTGATTTGAAGGATAAGTCGGAGAAGTTGACGGTGGAGATTAGGTGGAAAGGACCCAA
ATTGGCCTTGAGTTCGTTGAGGAGGACGGCGGTGAAGAGGAATTTTACGAAAGAAGTGGAGGTTTGTGGTGCGGAGGGGGAAAACGGTGGCGTTTTGGTG
GAGTGGGATGAGGAGTTCGAGAGTTTGTGTACTTTGTCTGCTTATAAAGAAAATGTGTTTCATCCTTGGGAGATCTCTTTCACTGTCTTCAATGGTGGGA
ACCAAGGGCAGAAGAACAAGGTTCCTGTTGTTGGAACAGCAACAGTGAACCTTGCTGAATTTGCATCTACAGCTGAACAGAAAGAGGTTGAGTTAAGACT
TCCTCTTGTGGTCTCTGCTGGTGTGGCCGAGCCTCAACCCTTGCTCTGTGTATCGCTCAGCTTATTGGAGTTGAGAACTGCTACCGAGACCTCTGAGCCA
TTACAGAGAGCGATAGTTCCAGTTCCATCGCCACCTCAATCTGGAGAAGCTGTCTCAACTGAAAAGGATGAGCTTTCTGCAATTAAAGCTGGTCTCAGAA
AGGTAAAGATTTTTACAGGATATGTGTCTACCAGGAGAGCAAAAAAGGCCTGTCGCGAGGAAGAGGGCAGTGAAGGCAGGTGCTCTGCCAGGAGCGAGGA
TGGTGAGGATAACTATCCATTTGATTCTGAGTCACTTGATGATTTGGAGGAAGGAGAGTCTGATGAGATCAAGGAAGATTCTACTGTGAGGAAGTCATTC
AGTTATGGCACACTGGCTTCTGCAAACTATGCTGGAGGACCCTTTCACTCTAGTACAACGATAAATGATGAAGATGAAGATTGGGTTTACTACAGCAATC
GCAAGTCAGATGTGGGTTGCTCACACAGTGATGATTATACACCATCAGTGTCTGCACCATCTCTCTTGCAAAGTTCTAAGCGCAGCATATTACCTTGGAG
GAAGAGGAAGTTGAGCTTTAGGTCTCCTAAAGCTAAAGGAGAGCCATTGTTGAAGAAGGCATATGGAGAAGAAGGGGGGGATGATATTGATTTTGATCGC
CGGCAGCTTAGCTCTGATGAATCTCTTGCTCTTGGGTGGCATAAGGCAGACGAGGATACATCTGCAAATCGATCATCAGTTTCTGAATTTGGTGATGACA
ATTTTGCCATAGGCAGTTGGGAGAAAAAAGAAGTGATAAGCCGTGATGGGCAGATGAAGCTTCAAACTGAGGTTTTCTTTGCTTCCATTGATCAGCGAAG
TGAGCGGGCTGCAGGTGAAAGTGCATGTACAGCCCTTGTTGCTGTTATTGCTGATTGGTTTCAGAATAACCGTGGTCTGATGCCCATTAAGTCCCAGTTT
GATAGTCTCATCAGAGAAGGGTCCTTGGAATGGAGAAACCTCTGTGAGAATGAAACCTACAGGGAGCGGTTCCCTGACAAACACTTCGACCTTGAAACAG
TTCTCCAAGCCAAGATACGTTTTCTCTCTGTACTCCCTGTCAAGTCCTTTATCGGGTTTTTCCATCCAGAAGGGATGGATGAGGGAAGATTTGACTTTTT
GCAAGGCGCCATGTCCTTCGATAACATTTGGGATGAGATAAGCCGCACTGGATTGGAATGTCCAAGCGATGATGAACCTCAGGTGTATGTTGTAAGTTGG
AACGACCATTTTTTCATTCTAAAGGTTGAACCAAAAGCTTACTACATTATCGACACATTAGGAGAGAGGCTCTATGAGGGATGCAATCAGGCCTACATTT
TGAAATTTGACAGCAACACGATTATTAACAAGTTGCAAAATGCTGCAGAATCATCCGATGAGAAAACAATGGGTGATCAGCAGAATGTGCCAGCCACAGT
GGAACCTAAGGATCAGCAGCAGGTGAACCTGAAGGAGGAGGAAGCTTCTATATTAGGGGCAATAATAACCAATCCTGAAGAACCATCTAAAAGTGAGGAA
CCATTAAAGAGTGAGGAAGAAGGGGAGGTTGTGTGCCAAGGAAAAGATTCTTGCAAGGAGTACATAAAGAGCTTCTTGGCAGCAATTCCAATCAGGGAAT
TACAGGCGGACATCAAGAAAGGTTTGATGGCATCAAAACCTCTTCATCATCGGTTGCAGATTGAGTTCCACTACACCCAGCACTTGCAACCATTAACTGA
AACTCATGCGACAGAAATGTTGACAGCACCACCAGAGTCAGTCAATGGCTCCATATGA
AA sequence
>Potri.006G201200.1 pacid=42768550 polypeptide=Potri.006G201200.1.p locus=Potri.006G201200 ID=Potri.006G201200.1.v4.1 annot-version=v4.1
MVVKMMRWRPWPPLVSKKYEVRLVVRRMEGWDVVREAVAAAPGTSSGGDLKDKSEKLTVEIRWKGPKLALSSLRRTAVKRNFTKEVEVCGAEGENGGVLV
EWDEEFESLCTLSAYKENVFHPWEISFTVFNGGNQGQKNKVPVVGTATVNLAEFASTAEQKEVELRLPLVVSAGVAEPQPLLCVSLSLLELRTATETSEP
LQRAIVPVPSPPQSGEAVSTEKDELSAIKAGLRKVKIFTGYVSTRRAKKACREEEGSEGRCSARSEDGEDNYPFDSESLDDLEEGESDEIKEDSTVRKSF
SYGTLASANYAGGPFHSSTTINDEDEDWVYYSNRKSDVGCSHSDDYTPSVSAPSLLQSSKRSILPWRKRKLSFRSPKAKGEPLLKKAYGEEGGDDIDFDR
RQLSSDESLALGWHKADEDTSANRSSVSEFGDDNFAIGSWEKKEVISRDGQMKLQTEVFFASIDQRSERAAGESACTALVAVIADWFQNNRGLMPIKSQF
DSLIREGSLEWRNLCENETYRERFPDKHFDLETVLQAKIRFLSVLPVKSFIGFFHPEGMDEGRFDFLQGAMSFDNIWDEISRTGLECPSDDEPQVYVVSW
NDHFFILKVEPKAYYIIDTLGERLYEGCNQAYILKFDSNTIINKLQNAAESSDEKTMGDQQNVPATVEPKDQQQVNLKEEEASILGAIITNPEEPSKSEE
PLKSEEEGEVVCQGKDSCKEYIKSFLAAIPIRELQADIKKGLMASKPLHHRLQIEFHYTQHLQPLTETHATEMLTAPPESVNGSI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11760 unknown protein Potri.006G201200
[exp]
0 1
AT3G51770 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODU... Potri.016G123800
[exp]
1.73 0.7166
AT4G36860 DAR1 DA1-RELATED PROTEIN 1, LIM dom... Potri.007G032500
[exp]
3.16 0.6905
AT1G68810 bHLH bHLH030 basic helix-loop-helix (bHLH) ... Potri.010G130000
[exp]
8.00 0.6607
AT3G09920 PIP5K9 phosphatidyl inositol monophos... Potri.006G121200
[exp]
12.84 0.5727
AT2G39220 PLP6, PLAIIB ,P... PATATIN-like protein 6 (.1) Potri.010G221700
[exp]
23.95 0.6353
AT5G43020 Leucine-rich repeat protein ki... Potri.007G046900
[exp]
29.69 0.6599
Potri.001G241250
[exp]
35.21 0.6222
AT3G25680 unknown protein Potri.010G131000
[exp]
42.81 0.5589
AT3G22780 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO... Potri.013G038301
[exp]
54.02 0.5944
AT4G12780 Chaperone DnaJ-domain superfam... Potri.014G197600
[exp]
55.56 0.6026

Potri.006G201200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.