Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11780 170 / 6e-55 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) AT5G06480 160 / 2e-51 Immunoglobulin E-set superfamily protein (.1) AT3G44100 134 / 5e-41 MD-2-related lipid recognition domain-containing protein (.1) AT2G16005 73 / 1e-16 MD-2-related lipid recognition domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G067800 [exp] 218 / 8e-74 AT3G11780 156 / 1e-49 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013596 [exp] 162 / 6e-52 AT3G11780 181 / 2e-59 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) Lus10021256 [exp] 159 / 8e-51 AT3G11780 183 / 4e-60 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) Lus10013366 [exp] 151 / 2e-47 AT3G11780 161 / 1e-51 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0532 [poplar] [flax] LIG PF02221 [poplar] [flax] E1_DerP2_DerF2 ML domain
Representative CDS sequence Show only first row Show all	>Potri.006G201400.1 pacid=42767578 polypeptide=Potri.006G201400.1.p locus=Potri.006G201400 ID=Potri.006G201400.1.v4.1 annot-version=v4.1 ATGGCTCACTGCATGATGATTGTTCCTTTGCTTATCTCGCTTTGTCTGATCCTACCTTTGATTCAAGCCTCCAAATTCCAGTACTGCGATAATAACAAGG ATTATGACGTTAAAGTTAGCGGAGTGAAGATAAGCCCAAATCCGGTGAAGAAAGGGAAACCAGCGACCTTCACTATCTCTGCAACAACAAGTGAATCAAT AACTGATGGGAAAATGAGGGTCGATGTTAGATACTTCGGATTTCCTGTGTATAGTCAGGATCATGATCTTTGCGAGGAAACGCCCTGCCCTGTAACCAGT GGTAATTTTGTGGTGTCTCACACTGAAGAGTTGCCTGGGTTCACTCCACCTGGTTCATACTCTCTTACTATGAAGATGATTAATGGAGAAAGTCGTGAAC TTACATGCATTTCCTTTGGTTTTCGCATTGGTTCTGCATCATCCGTTTCTGACGTTTAG
AA sequence Show only first row Show all	>Potri.006G201400.1 pacid=42767578 polypeptide=Potri.006G201400.1.p locus=Potri.006G201400 ID=Potri.006G201400.1.v4.1 annot-version=v4.1 MAHCMMIVPLLISLCLILPLIQASKFQYCDNNKDYDVKVSGVKISPNPVKKGKPATFTISATTSESITDGKMRVDVRYFGFPVYSQDHDLCEETPCPVTS GNFVVSHTEELPGFTPPGSYSLTMKMINGESRELTCISFGFRIGSASSVSDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11780			MD-2-related lipid recognition...		Potri.006G201400 [exp]	0	1
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.001G315800 [exp]	1.73	0.9440
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G080400 [exp]	3.87	0.9320
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.012G095300 [exp]	8.66	0.9262
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.019G029200 [exp]	12.96	0.9279	VATE.1
AT4G12590			Protein of unknown function DU...		Potri.016G013100 [exp]	13.74	0.9080
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Potri.003G086700 [exp]	16.61	0.8890
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Potri.001G369000 [exp]	18.02	0.9044
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	18.16	0.9252
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.017G056000 [exp]	18.49	0.9103
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.006G104500 [exp]	18.76	0.9111

Compare expression of checked genes

Potri.006G201400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.