Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44150 330 / 2e-115 unknown protein AT3G11800 291 / 7e-100 unknown protein AT2G15910 230 / 2e-74 CSL zinc finger domain-containing protein (.1.2) AT3G48630 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068000 [exp] 385 / 2e-137 AT3G44150 342 / 4e-120 unknown protein Potri.004G146800 [exp] 249 / 3e-83 AT3G11800 271 / 5e-92 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016181 [exp] 325 / 2e-113 AT3G44150 328 / 2e-114 unknown protein Lus10029366 [exp] 323 / 1e-112 AT3G44150 328 / 1e-114 unknown protein Lus10023845 [exp] 251 / 5e-84 AT3G44150 276 / 3e-94 unknown protein Lus10021005 [exp] 249 / 5e-84 AT3G44150 274 / 1e-93 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G201600.1 pacid=42769894 polypeptide=Potri.006G201600.1.p locus=Potri.006G201600 ID=Potri.006G201600.1.v4.1 annot-version=v4.1 ATGACAACGTTGACAAGAGAGCTAAAACCTCTCCTTTTATTCCTCGTAACAATAACATCATCAACTCTATTGCCTGTACAATCAGACAACACGAACCATG TCTACTCACCCTGTGCAGACACCACTGTACAGGTATCAGATGGCTTCACTTTTTCTATCGCTTTTTCGTCGAGTAAGGCTTTCTTCTTCAACAGTACCCT ACAGTTGTCTCCCTGTGACAGCAGACTTTCTCTTACTAGCCAGAATTCTCAGATCTCAGTTTTTAGACCTAAAGTCGATGAGATCTCTCTCCTCACTATC AACACCTCATCTTTCTCTCCGGGCGACTTTGGTGGGTATATGGTTGCATTTGCCGGTCGAAAATATGCTGCAAGGTCTCTCCCTGCTTTTGTTGCAAACA GTACATACACTGTGACAAGCTTCACTCTGGTGCTTGAGTTTAAGAAGGGAAGGCTACAGAACTTATATTGGAAAAGGGATGGCTGCGCTAAATGTTCAGG AAACTCAAAATTTGTCTGCCTCAACAATCAGGATTGTGCAATCAGAACATCCAGTTGCATAAAAAACGGAGGTAGTGTTGATTGCAGCCTTGGGATACAA TTGGCATTCTCTGGCACAGACAAACACTTTTCTGCTCTCAACTCATGGTACGAAGTGGAAAACCTTCGACAGTACTCGCTTTACGGTCTTTACTCAAATC TCAGGGATTCTCTCACCAGTCAGTATAACAACATCTTCTAA
AA sequence Show only first row Show all	>Potri.006G201600.1 pacid=42769894 polypeptide=Potri.006G201600.1.p locus=Potri.006G201600 ID=Potri.006G201600.1.v4.1 annot-version=v4.1 MTTLTRELKPLLLFLVTITSSTLLPVQSDNTNHVYSPCADTTVQVSDGFTFSIAFSSSKAFFFNSTLQLSPCDSRLSLTSQNSQISVFRPKVDEISLLTI NTSSFSPGDFGGYMVAFAGRKYAARSLPAFVANSTYTVTSFTLVLEFKKGRLQNLYWKRDGCAKCSGNSKFVCLNNQDCAIRTSSCIKNGGSVDCSLGIQ LAFSGTDKHFSALNSWYEVENLRQYSLYGLYSNLRDSLTSQYNNIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44150			unknown protein		Potri.006G201600 [exp]	0	1
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.013G094400 [exp]	3.16	0.7305
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	4.47	0.7369
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.006G077600 [exp]	10.67	0.6338	MBD902
AT1G80120			Protein of unknown function (D...		Potri.006G113800 [exp]	11.13	0.6903
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.004G167200 [exp]	13.22	0.6846
AT4G10610		ATRBP37, RBP37,...	RNA-BINDING PROTEIN 37, CTC-in...		Potri.011G152700 [exp]	13.85	0.6529
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Potri.005G054700 [exp]	15.81	0.6256
AT1G71970			unknown protein		Potri.013G111700 [exp]	18.41	0.7076
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	22.49	0.6568
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Potri.008G052601 [exp]	33.49	0.6165

Compare expression of checked genes

Potri.006G201600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.