Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31220 252 / 1e-78 bHLH bHLH010 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G06170 235 / 1e-72 bHLH bHLH149 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31210 232 / 2e-71 bHLH bHLH091 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31215 72 / 5e-15 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 72 / 3e-13 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 71 / 7e-13 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G12860 70 / 1e-12 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G17880 70 / 2e-12 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT3G26744 69 / 2e-12 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT2G16910 69 / 2e-12 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068500 [exp] 674 / 0 AT2G31220 253 / 7e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G023800 [exp] 157 / 4e-45 AT1G06170 125 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G083500 [exp] 78 / 2e-15 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G176900 [exp] 74 / 6e-14 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G147300 [exp] 72 / 2e-13 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G103700 [exp] 69 / 2e-12 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G128000 [exp] 67 / 1e-11 AT5G41315 561 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G136300 [exp] 67 / 2e-11 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G106000 [exp] 64 / 1e-10 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007101 [exp] 295 / 2e-96 AT2G31220 268 / 8e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020478 [exp] 295 / 3e-96 AT2G31220 271 / 3e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 80 / 1e-15 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 72 / 4e-14 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 74 / 1e-13 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 69 / 3e-12 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 69 / 4e-12 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 69 / 4e-12 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10012457 [exp] 63 / 8e-11 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10032542 [exp] 64 / 1e-10 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G202100.1 pacid=42769956 polypeptide=Potri.006G202100.1.p locus=Potri.006G202100 ID=Potri.006G202100.1.v4.1 annot-version=v4.1 ATGTATGAAGAGACAGCCTGCTTTGAAACCAACAACTCCATAGTAGAAGGTGGGAATGATGATGGGTTTTGTCAAGTTTCACCATTCATGACAGGTAGCA GTACCACAAGCAGCTTTGAAGAAAGTTTCAAGCTCTCCATGGAAGAGCTCTCTAATCATTACCACCAAGAAGAATCTGCTGCTGCTGCCTCTATGGAAGA AATTCAACTTCAACATCACATGGCTTTTAACAACAACTGCCACCATTTAATGGAACAGTACCCTACAAATCATCATCAAGTCCTGTCATATGACCACCCC TCAAATTGGGATCCCAATACCATTCAATTCCAAGAGATGCACCAAGTACTTGATCAAAATGGCAACTTTAATGCTACTGCTAATACACCATCCTCCTTGC TACCTGACCTTCTCAATCTTTTCAACCTTCCCAGATGCACATCAACATCCACTTTGCTTCCGAATTCATCAATTTCCTTTACAAACCCTGCCCATAAGAC TCCCTCGGGCTTTATGGGGGTGGACAGTACATCTGTGCTTTTCGACTCAAACCCACTTGCTCCACAGTTTAGGGAATTGGTTCATTCTTTACCACCACAT GGCTATGGTTTGCCTGCACCCTTGTTTGGCGGTGGCCAAGGGGGTGATCACGTGGATGGACTAAGTGGAGGAGGTCTAAGTTACCAAGATGGGGGTCATG GAGATGGGGTTTTTGAGTTTACTGCAGAAATGGCATGTATTGGCAAGGGAATCAGGAAATCTGGCAAGGTTACTAAGCATTTTGCAACAGAACGCCAAAG GAGAGAGCACCTGAATGGAAAGTATACTGCCTTGAGGAACTTGGTTCCAAATCCTTCCAAGAATGATAGGGCATCTGTGGTTGGAGATGCAATTAACTAT ATCAAAGAACTTCTTCGGACGGTTGAGGAGCTGAAATTACTAGTGGAGAAGAAGAGAAACGGCAGAGAGAGAATCAAAAGGCGCAAGCCTGAAGAAGATG GTGGGGTAGACGTTCTTGAGAATTCTAACACGAAGGTTGAACAAGATCAGTCAACATACAATAATGGTTCATTAAGGAGTTCTTGGCTTCAGAGGAAATC CAAGCATACCGAGGTAGATGTTCGCCTAATCGAAGATGAAGTTACAATTAAACTTGTTCAGAGAAAGAAGGTTAATTGCTTGTTATCTGTTTCCAAAGTC CTTGATGAGCTTCAGCTTGATCTCCACCATGCTGCTGGTGGCCTTATTGGGGATTACTACAGCTTTCTGTTCAACACTAAGATAAACGAAGGATCATGTG TTTATGCTAGTGGAATAGCCAACAAACTGCTTGAGGTTGTGGACAGACAGTATGCATCCAGTACCAGTGTACCAGCAGCCAGTTGTTAG
AA sequence Show only first row Show all	>Potri.006G202100.1 pacid=42769956 polypeptide=Potri.006G202100.1.p locus=Potri.006G202100 ID=Potri.006G202100.1.v4.1 annot-version=v4.1 MYEETACFETNNSIVEGGNDDGFCQVSPFMTGSSTTSSFEESFKLSMEELSNHYHQEESAAAASMEEIQLQHHMAFNNNCHHLMEQYPTNHHQVLSYDHP SNWDPNTIQFQEMHQVLDQNGNFNATANTPSSLLPDLLNLFNLPRCTSTSTLLPNSSISFTNPAHKTPSGFMGVDSTSVLFDSNPLAPQFRELVHSLPPH GYGLPAPLFGGGQGGDHVDGLSGGGLSYQDGGHGDGVFEFTAEMACIGKGIRKSGKVTKHFATERQRREHLNGKYTALRNLVPNPSKNDRASVVGDAINY IKELLRTVEELKLLVEKKRNGRERIKRRKPEEDGGVDVLENSNTKVEQDQSTYNNGSLRSSWLQRKSKHTEVDVRLIEDEVTIKLVQRKKVNCLLSVSKV LDELQLDLHHAAGGLIGDYYSFLFNTKINEGSCVYASGIANKLLEVVDRQYASSTSVPAASC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Potri.006G202100 [exp]	0	1
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043600 [exp]	1.41	0.9673
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.005G079600 [exp]	1.73	0.9652	Pt-ACT11.10
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	3.74	0.9654
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Potri.014G031100 [exp]	6.48	0.9604
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	7.07	0.9618	Pt-CHRC.3
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074800 [exp]	8.00	0.9583
AT2G14830			Regulator of Vps4 activity in ...		Potri.013G135700 [exp]	8.71	0.9484
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	9.38	0.9531
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	9.53	0.9514
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	11.83	0.9545

Compare expression of checked genes

Potri.006G202100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.