Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02550 76 / 5e-16 unknown protein AT2G24960 65 / 1e-11 unknown protein AT4G02210 57 / 3e-09 unknown protein AT1G30140 53 / 3e-08 unknown protein AT5G27260 50 / 7e-07 unknown protein AT5G05800 48 / 4e-06 unknown protein AT2G29880 44 / 4e-05 unknown protein AT3G11290 42 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G008050 [exp] 492 / 1e-178 AT4G02550 77 / 2e-16 unknown protein Potri.011G163248 [exp] 489 / 3e-177 AT4G02550 93 / 4e-22 unknown protein Potri.001G157750 [exp] 488 / 4e-177 AT4G02550 73 / 6e-15 unknown protein Potri.009G022650 [exp] 486 / 3e-176 AT4G02550 79 / 7e-17 unknown protein Potri.012G061366 [exp] 478 / 4e-173 AT4G02550 71 / 2e-14 unknown protein Potri.006G196716 [exp] 476 / 2e-172 AT4G02550 69 / 2e-13 unknown protein Potri.002G206500 [exp] 454 / 6e-164 AT4G02550 88 / 4e-20 unknown protein Potri.006G146100 [exp] 443 / 1e-159 AT4G02550 79 / 7e-17 unknown protein Potri.001G014200 [exp] 441 / 1e-158 AT4G02550 81 / 6e-18 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026250 [exp] 64 / 4e-11 AT2G24960 750 / 0.0 unknown protein Lus10013421 [exp] 63 / 4e-11 AT4G02210 418 / 1e-144 unknown protein Lus10022379 [exp] 55 / 1e-08 AT5G27260 74 / 1e-14 unknown protein Lus10004397 [exp] 55 / 2e-08 AT5G27260 77 / 6e-16 unknown protein Lus10010304 [exp] 53 / 8e-08 AT4G02210 395 / 1e-135 unknown protein Lus10043125 [exp] 48 / 6e-07 AT2G24960 51 / 2e-08 unknown protein Lus10032816 [exp] 48 / 1e-06 AT2G24960 57 / 1e-09 unknown protein Lus10018174 [exp] 49 / 2e-06 AT5G41980 68 / 1e-12 unknown protein Lus10037335 [exp] 46 / 1e-05 AT5G27260 69 / 7e-13 unknown protein Lus10010798 [exp] 46 / 2e-05 AT5G27260 61 / 5e-10 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G202550.1 pacid=42767734 polypeptide=Potri.006G202550.1.p locus=Potri.006G202550 ID=Potri.006G202550.1.v4.1 annot-version=v4.1 ATGTCTCACATGTTGCTTGAGATATTAGCTGAGGAGGCACTTAAAGGAAGCAAACCTTCTTCCACCTTTAAAGCAGAATCTTTTGTTAAGGTGGCTACAG AAATAAGTCAAAAGTTCAATGTGCAATGCGAGCCTAAGCATGTGGACAATCATTTCAAGACTGTGAAAAAAGAATGGGGAATAATTACCAAGCTTAAAAA TAAAAGTGGCTTTGGCTGGGATGATTGTTTGAAGATGATTACAGTTTCGAAAGATATATATGATGAAGAAGTAAAGGCACATCCCAATCATGACAAGTAT CTCAACAAAAAACTTGATATGTACGAGATAATGACAATTGTTGTTGGAAAAGACATGGCAACCGGGAATTATGCCAAATCATATGCTAATGTCAACTTGG AAGAGAACACTCAAGAGCAATCAATTTCAATTGAAAATGAAGGGGAATATGAAGAAACTTCTAAGGGAAAAGAGACATCTTCCTCTAGTACGCAAAAGAG GCAACATAGGAAGAGAAATTGCATATATGAAGATGATGGTGTTGAAAAGTTGTCTAAACAGATTGGAGATATAGCCCTTGCAATTCAAAGCCTCAGCAAA AATCAACTTGATGTTAATGCGTTATATGCGGAAGTGATGAAAATTGAAGGCTTTGATGAGATCACTCTTGGGGAGGCATTTGATCATTTGGTCCAAAATG AAATGTTGGCAAAAGCATTTATGGCAAAAAATGCTAATTTGAGGAAAATTTGGGTTCAGAATTTTGTGAACCAACACTACTACAGGCCTGCTTGCTAA
AA sequence Show only first row Show all	>Potri.006G202550.1 pacid=42767734 polypeptide=Potri.006G202550.1.p locus=Potri.006G202550 ID=Potri.006G202550.1.v4.1 annot-version=v4.1 MSHMLLEILAEEALKGSKPSSTFKAESFVKVATEISQKFNVQCEPKHVDNHFKTVKKEWGIITKLKNKSGFGWDDCLKMITVSKDIYDEEVKAHPNHDKY LNKKLDMYEIMTIVVGKDMATGNYAKSYANVNLEENTQEQSISIENEGEYEETSKGKETSSSSTQKRQHRKRNCIYEDDGVEKLSKQIGDIALAIQSLSK NQLDVNALYAEVMKIEGFDEITLGEAFDHLVQNEMLAKAFMAKNANLRKIWVQNFVNQHYYRPAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02550			unknown protein		Potri.006G202550 [exp]	0	1
AT4G02550			unknown protein		Potri.009G022650 [exp]	2.44	0.9289
					Potri.004G170442 [exp]	3.46	0.9192
					Potri.017G020864 [exp]	7.34	0.9008
AT4G02550			unknown protein		Potri.007G059900 [exp]	10.24	0.8803
AT4G02550			unknown protein		Potri.006G146100 [exp]	12.44	0.8625
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.013G161800 [exp]	18.76	0.8724	Pt-KAO2.1,CYP88A8
AT5G36930			Disease resistance protein (TI...		Potri.006G283600 [exp]	21.84	0.8897
AT4G02550			unknown protein		Potri.015G008050 [exp]	26.22	0.8796
AT5G36930			Disease resistance protein (TI...		Potri.019G021024 [exp]	27.03	0.8778
AT4G02550			unknown protein		Potri.011G163248 [exp]	27.05	0.8851

Compare expression of checked genes

Potri.006G202550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.