Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11840 362 / 3e-122 PUB24 plant U-box 24 (.1) AT2G35930 339 / 7e-114 PUB23 plant U-box 23 (.1) AT3G52450 311 / 1e-102 PUB22 plant U-box 22 (.1) AT3G19380 166 / 5e-47 PUB25 plant U-box 25 (.1) AT1G49780 153 / 5e-42 PUB26 plant U-box 26 (.1) AT1G66160 140 / 4e-37 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT5G37490 122 / 8e-31 ARM repeat superfamily protein (.1) AT5G09800 110 / 1e-26 ARM repeat superfamily protein (.1) AT5G64660 110 / 2e-26 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G18710 108 / 9e-26 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069500 [exp] 697 / 0 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.009G016100 [exp] 447 / 3e-156 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.001G216300 [exp] 445 / 2e-155 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.016G069400 [exp] 372 / 6e-127 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202600 [exp] 367 / 5e-125 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 358 / 2e-121 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 350 / 2e-118 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.002G174500 [exp] 257 / 9e-82 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 241 / 1e-75 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004191 [exp] 430 / 7e-147 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10029395 [exp] 423 / 3e-146 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10000800 [exp] 357 / 1e-120 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 348 / 7e-117 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10013584 [exp] 337 / 1e-112 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 332 / 6e-111 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10029393 [exp] 314 / 9e-104 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10016166 [exp] 313 / 3e-103 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10004095 [exp] 159 / 2e-46 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10013352 [exp] 158 / 1e-45 AT2G35930 212 / 6e-67 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.006G202700.1 pacid=42770000 polypeptide=Potri.006G202700.1.p locus=Potri.006G202700 ID=Potri.006G202700.1.v4.1 annot-version=v4.1 ATGGATGATATTGAAGTTCCAAAGTTTTTTGTCTGCCCAATATCTCTCCAAATCATGAAAGACCCGGTTACAACCATAACTGGCATCACATATGATCGAG AGAGCATTGAGCACTGGTTATTCACTAGTCAAAACACAGCTTGTCCAGTCACCAAACAGCCCTTGCAAAAAGATTTAGATTTAACCCCTAATCACACCTT ACGCAGGTTAATCCAAGCTTGGTGCACCGAGAATGCATCCCATGGTGTTGATAGAATCCCCACCCCTAAACCTTGTCTTGACAAAGCCCATGTCCTTAAA CTCATCAAAAATCTTTCGCATCACGAGTTGCAAATTAAAACTCTTACACGATTGGAATTACTTGCGGCGGAGAATGAAAGAAACAGGAAGTGCATGGTGG ATGCTGGCCTGCCCAAGGCCATGTTATTGTTTATAGCAGCATGTTTCAAGAAAGGTCAAGTTTCTGGTATTCAAGAAGCTCTTAGTATACTATGTTTTAT TAGAATTCCTCGAAGTGAATCAAGGGCCTTTTTTAGTGAAATTGATGATAAGATTATCGAATCCTTGACTTGGGTTTTAGGGTGCAAAATGGAGAATTAT GCCACAGTTAAATCCCATGCAGCTTCGGTGTTGAAAATGCTACTTGAAGAAGCGAGTTCTAGTGTATTGGAGAGGCTTAAACCTGAATTCTTTGAGAGGA TTGTTGGTGTTTTGAGAGAGAGAATCACTCATCAAGGTATTAATGCCGCCTTGCAAGTGTTGTTAAATGCTTGTCCCTGGGGAAGAAATCGGAAAATGAT GGTGGAATCCGGTGCAGTTTTTGAGCTTATTGAGCTTGAATTGGGATCACCTGAAAGAAGAACCACAGAGCTCAATTTGGGTGTTCTTTTTCATTTATGT TGTTGTGCTGAGGGAAGGGCTCAATTCTTAAGCCATGGAGGTAGCATTGCTGTGGTTGCAAAGAGAATATTGAGGGTTTCTCCAGCGGTGGATGATCGAG CCATTCTGATCCTTTCACAGATATGTAAATTCTCAGGAACAAGTATGGTGATCCAAGAAATGGCGGATGTTAAAGCTGTGACAAAGCTATGTATGTTGCT TCAAGCAGACTGTGCAACATATTTGAAGGACAAAGCTAGGGAAATCCTTAGATCACACTCTGACAAGTGGAAGAACTCTCCTTGCATTTTTTCTTCTCTC TCGAGTCTTGAGTTCCAGGTATCCAGCTAG
AA sequence Show only first row Show all	>Potri.006G202700.1 pacid=42770000 polypeptide=Potri.006G202700.1.p locus=Potri.006G202700 ID=Potri.006G202700.1.v4.1 annot-version=v4.1 MDDIEVPKFFVCPISLQIMKDPVTTITGITYDRESIEHWLFTSQNTACPVTKQPLQKDLDLTPNHTLRRLIQAWCTENASHGVDRIPTPKPCLDKAHVLK LIKNLSHHELQIKTLTRLELLAAENERNRKCMVDAGLPKAMLLFIAACFKKGQVSGIQEALSILCFIRIPRSESRAFFSEIDDKIIESLTWVLGCKMENY ATVKSHAASVLKMLLEEASSSVLERLKPEFFERIVGVLRERITHQGINAALQVLLNACPWGRNRKMMVESGAVFELIELELGSPERRTTELNLGVLFHLC CCAEGRAQFLSHGGSIAVVAKRILRVSPAVDDRAILILSQICKFSGTSMVIQEMADVKAVTKLCMLLQADCATYLKDKAREILRSHSDKWKNSPCIFSSL SSLEFQVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.006G202700 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Potri.002G054900 [exp]	2.23	0.9112
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	6.00	0.8684
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Potri.010G043900 [exp]	8.94	0.8612
AT1G05280			Protein of unknown function (D...		Potri.017G039600 [exp]	10.19	0.8358
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	11.74	0.8516
AT5G58730			pfkB-like carbohydrate kinase ...		Potri.009G046200 [exp]	13.41	0.8401
AT2G03810			18S pre-ribosomal assembly pro...		Potri.008G111800 [exp]	15.49	0.8160
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220700 [exp]	15.58	0.8426	Pt-CYP94.7
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.009G063300 [exp]	17.46	0.8602	CAD.2
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067300 [exp]	19.33	0.8378

Compare expression of checked genes

Potri.006G202700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.