Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05675 533 / 0 BTB/POZ domain-containing protein (.1.2) AT4G10800 204 / 1e-62 unknown protein AT2G13690 48 / 1e-05 PRLI-interacting factor, putative (.1) AT1G63850 47 / 2e-05 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086100 [exp] 348 / 1e-116 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.003G144700 [exp] 244 / 3e-78 AT4G10800 265 / 2e-88 unknown protein Potri.016G069632 [exp] 144 / 5e-42 AT3G05675 0 / 1 BTB/POZ domain-containing protein (.1.2) Potri.016G069566 [exp] 121 / 2e-33 AT3G05675 86 / 5e-21 BTB/POZ domain-containing protein (.1.2) Potri.005G129700 [exp] 63 / 2e-10 AT3G50780 623 / 0.0 unknown protein Potri.007G032800 [exp] 61 / 9e-10 AT3G50780 654 / 0.0 unknown protein Potri.004G154600 [exp] 59 / 4e-09 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 49 / 4e-06 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G100900 [exp] 49 / 8e-06 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013580 [exp] 497 / 6e-175 AT3G05675 438 / 9e-152 BTB/POZ domain-containing protein (.1.2) Lus10021269 [exp] 486 / 1e-170 AT3G05675 439 / 4e-152 BTB/POZ domain-containing protein (.1.2) Lus10033220 [exp] 341 / 1e-113 AT3G05675 346 / 6e-116 BTB/POZ domain-containing protein (.1.2) Lus10023030 [exp] 340 / 1e-113 AT3G05675 348 / 2e-116 BTB/POZ domain-containing protein (.1.2) Lus10022484 [exp] 77 / 5e-15 AT3G50780 602 / 0.0 unknown protein Lus10040458 [exp] 55 / 8e-08 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1) Lus10023573 [exp] 55 / 9e-08 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1) Lus10020892 [exp] 51 / 1e-06 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10028772 [exp] 49 / 6e-06 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 48 / 1e-05 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.006G202900.6 pacid=42769058 polypeptide=Potri.006G202900.6.p locus=Potri.006G202900 ID=Potri.006G202900.6.v4.1 annot-version=v4.1 ATGGAATCTCCAGAGCCAAGTAGGATTGGTGATCGTTCAACCAGTGATGTTGTTGTCCGACTCCGAACACATGAAGGCCGAGATGATTGGTTTTATTGCC ATTCTTTTATCTTGATAGAAAAGAGCAAATATTTTGGTGACCGCCTTTCTGAGAACTGGCCTACATGTCAGATCCTTGACTCACGGAACTGTGTTGAAGT TTACTGTGAAGAATCAGACTTTGATCACCATGTCAATTTTTTACGACTTCTCTATGTTGTTATAGATGGTTCATTGGAAGACATATGGCATGGTGTGAAG AATGCCCTTGGCATTCTGCGTGTAGCTGTGGAACTTGGGTGCCCACAAATTGTTAATGCTTGTGTGAACTACTTGGAAGCAATGCCATGGGAAGAAGCTG AGGAGGATGAGATCCTAAAAATCATACCAGGCATGGGATCGAAATCCCAACCAATTCTTGCCCGTGTCCAACCAGTCAATCCGTCAGCTGTATTGAGAAT TTTTCTGTCAGCTATTAAATTTGCCACATCATCACCTCCTTCACCCATGAATGATCTTAAAACTACTGCACAAGAGCAGCTCGAATACATGCTGACTGAA GATGATGATGCCCCTCTACTAACAGCTGATCAAGAGGTCAAATTTGAAGTAAAAGAATGTGTGAAGGGACTGTTCACCAGATTTAACAATATGCTAGAAG CTCTGTTATGTGAGCCTGTGGAATCTGCCAATGAGAAAGGGAAAATGCAATCTTTTCAATCATATCTATCAGATTTATCGTGGGCTTGTCAGATACTAAA TAAGTTGGAAATCATGAAGGAATTTGTCAATAGTTGGGTAGGCGCATCAGATAAGATAGTTCTGGTTGTTGAGCAAGCTAGTTCGGTAGCTGAAATTATT GAGACAAAGTCGAAGGTTATAGAGGTGGCAGCAAAGGTTTTAGAAGCAATAGGATATGGTAACGTTATTCTGCCTACTGCAAAACGGTTTCACATGGTCA AGGTTTGGCTTCCATTTGTGAGGGTTACCAAACCATTAATTGATTCTGCCACGACTAATGCCAAAGATGCTCCAGAACTTAGGATTGATGGTGAGCTATG GCAGTCCTTAGAATCCACATTTGTTTCTATGGTTCTTACACTGCCATCAGAAGACCAGGCAGAGATTTTGACAGAATGGTTAGGGAATGAACATATTCAC TATCCAGACTTCACTGAGGCATTTGAGGTGTGGTGTTACAGGTCCAAGGTTGCGAAGAGAAGATTAGCAGACATATTGGGCAACCACGGTATGGCCAATA GCACACTTTGA
AA sequence Show only first row Show all	>Potri.006G202900.6 pacid=42769058 polypeptide=Potri.006G202900.6.p locus=Potri.006G202900 ID=Potri.006G202900.6.v4.1 annot-version=v4.1 MESPEPSRIGDRSTSDVVVRLRTHEGRDDWFYCHSFILIEKSKYFGDRLSENWPTCQILDSRNCVEVYCEESDFDHHVNFLRLLYVVIDGSLEDIWHGVK NALGILRVAVELGCPQIVNACVNYLEAMPWEEAEEDEILKIIPGMGSKSQPILARVQPVNPSAVLRIFLSAIKFATSSPPSPMNDLKTTAQEQLEYMLTE DDDAPLLTADQEVKFEVKECVKGLFTRFNNMLEALLCEPVESANEKGKMQSFQSYLSDLSWACQILNKLEIMKEFVNSWVGASDKIVLVVEQASSVAEII ETKSKVIEVAAKVLEAIGYGNVILPTAKRFHMVKVWLPFVRVTKPLIDSATTNAKDAPELRIDGELWQSLESTFVSMVLTLPSEDQAEILTEWLGNEHIH YPDFTEAFEVWCYRSKVAKRRLADILGNHGMANSTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05675			BTB/POZ domain-containing prot...		Potri.006G202900 [exp]	0	1
AT2G25910			3'-5' exonuclease domain-conta...		Potri.018G058900 [exp]	1.73	0.7788
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.004G214000 [exp]	2.44	0.7671
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.016G017500 [exp]	7.74	0.6979
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.006G110200 [exp]	7.74	0.7069
AT1G68490			unknown protein		Potri.015G047100 [exp]	13.56	0.6722
AT4G19150			Ankyrin repeat family protein ...		Potri.001G130500 [exp]	14.69	0.6528
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.008G132900 [exp]	15.29	0.6510
AT4G38960	CO		B-box type zinc finger family ...		Potri.004G162600 [exp]	15.68	0.6819
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	16.43	0.6440
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	16.88	0.6822

Compare expression of checked genes

Potri.006G202900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.