Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35940 492 / 6e-166 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT2G16400 257 / 4e-78 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 251 / 2e-75 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT1G75410 233 / 2e-68 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G27220 229 / 7e-68 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G19700 231 / 2e-67 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT4G36870 229 / 3e-65 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 224 / 4e-64 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT5G41410 213 / 4e-60 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT5G02030 192 / 4e-53 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069700 [exp] 993 / 0 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 563 / 0 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 552 / 0 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.004G159300 [exp] 280 / 1e-84 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 272 / 1e-81 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 259 / 1e-76 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.007G032700 [exp] 242 / 2e-69 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.005G129500 [exp] 232 / 7e-66 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.001G100800 [exp] 229 / 8e-66 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004201 [exp] 578 / 0 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 539 / 0 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 361 / 6e-117 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 289 / 8e-88 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 280 / 2e-84 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 275 / 1e-82 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10010633 [exp] 237 / 3e-69 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10033192 [exp] 226 / 4e-65 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10016790 [exp] 206 / 4e-59 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022599 [exp] 209 / 8e-59 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.006G203000.8 pacid=42770460 polypeptide=Potri.006G203000.8.p locus=Potri.006G203000 ID=Potri.006G203000.8.v4.1 annot-version=v4.1 ATGGCGACATACTTTCATGGGAATCCTGAAATCCAAGCAGCTGCTGCATCAGCGGAAGGTCTTCAAACTCTTGTGCTTATGAACCCTACTTATGTCCAAT ACTCTGAAACCCCTCCACCACCACAATCCAACAACCTTGTATTCCTTAACGCCGCTGCTTCTGCTGCTGCCAACAGCCTCTCTCCTCCGCCGCACCTCTC GGGCCACGCGCCATCGAACACCCAACAATTCGTCGGTATCCCTTTGGACCCTAACTCCCATGAGGCTTCTACTTTGCATGGACTTATTCCCCGTGTCCAT TACAATTTTTATAATCCAATTGACTCTACATCGACTGCGCGTGAAACACCACGCGCCCAACAAGGCCTGTCTTTGAGCCTCTCCTCACAACAGCAAGGCG GTTTTGGATCACAGGCTCAAGCTATGTCTGGTGAAGATATAAGGGTGTCTGGTGGGTTGGTGTCACCAGGTTCGGGTGTGACAAATGGGGTACCGGGTAT GCAAGGGGTCTTGTTGAGCTCAAAGTACTTGAAGGCCACTGAAGAGCTACTTGATGAGGTTGTTAATGTGAATAGTAATGGAATCAAGAGTGAATTGTCA AAGAAGAGTAACGGGATTAGTAGTAATAATAGCAATAAGGTGATTGGAGAGTCATCAACCGGAGAAGGGTCTGGCGAAGGAGAAGCAAGTGGGAAGCGCG GACCGGAGCTTTCCACTGCAGAGAGGCAGGAAATTCATATGAAGAAGGCTAAGCTTATGAGCATGCTCGATGAGGTGGAGCAGAGGTACAGGCAGTATCA TCACCAGATGCAGATAGTGATTTCCTCGTTTGAGCAAGCAGCAGGAATTGGTTCAGCAAAGACATACACAGCCCTTGCATTGAAAACAATCTCCAAGCAG TTTAGGTGCTTGAAAGATGCAATAACAGGTCAAATTAAAGCTGCAAACAAAAGCTTAGGTGAAGAGGATTGCTTAGGAGGAAAGATTGAAGGTTCAAGGC TCAAATTTGTCGATCATCACCTTCGACAACAGCGTGCACTTCAGCAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAG ATCAGTTTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTCCACCCCTATCCCAAGGATTCAGACAAACACATGCTCGCAAAACAAACAGGGCTCACG AGGAGCCAGGTGTCTAATTGGTTCATAAATGCTCGAGTTCGACTTTGGAAGCCAATGGTAGAAGAAATGTACATGGAGGAAATTAAGGAACAAGAACAGA ATGGATCAGAGGACAAAACAAGCAAGAGCGAACACAATGAAGATGCTGCTTCAAGGTCAGTTCTGCAAGAGAAAGGTTCAGTTAACGGAAATCTAACTAG AAGCTTCAAGTCCTTGGACAATTCACCGGATGCTCCTTCTGCAATCTCAATACCCACATCTTCAACATCTCCTGTTGGGGGAAATCTCCGAAACCAGTCT GGATTTTCCTTTATGGGGTCATCAGAATTAGACGGGATCACACAAGGGAGCCCAAAGAAACCAAGAAGCCATGATTTGATACAATCCCCAACTAGTGTGC CATCCATTAACATGGATATCAAGCCTGGCGAGGCAAACAATGAGCAGGTTTCTATGAAATTCGGCGATGAGAGGCAGAGTAGGGATGGCTACTCATTCAT AGGAGGCCAAACCAACTTCATTGGAGGTTTTGGGCAATATCCAATGGGGGAAATTGGGAGGTTTGATGGAGAGCAGTTCACGCCAAGGTTTTCTGGCAAT GGTGTCTCTCTCACTCTTGGGCTACCTCATTGTGAAAACCTCTCCTTATCAGGTACTCATCAAACTTTTCTTCCAAACCAAAACATTCAACTGGGAAGAA GAGTAGAGATCGGCGAACCAAACGAGTATGGAGCCCTTAACACATCCACGCCTCACTCTTCAACTGCATACGAGAGCATTGACATTCAGAACCGAAAGAG GTTTATAGCACAACTGTTGCCAGACTTTGTGGCCTGA
AA sequence Show only first row Show all	>Potri.006G203000.8 pacid=42770460 polypeptide=Potri.006G203000.8.p locus=Potri.006G203000 ID=Potri.006G203000.8.v4.1 annot-version=v4.1 MATYFHGNPEIQAAAASAEGLQTLVLMNPTYVQYSETPPPPQSNNLVFLNAAASAAANSLSPPPHLSGHAPSNTQQFVGIPLDPNSHEASTLHGLIPRVH YNFYNPIDSTSTARETPRAQQGLSLSLSSQQQGGFGSQAQAMSGEDIRVSGGLVSPGSGVTNGVPGMQGVLLSSKYLKATEELLDEVVNVNSNGIKSELS KKSNGISSNNSNKVIGESSTGEGSGEGEASGKRGPELSTAERQEIHMKKAKLMSMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQ FRCLKDAITGQIKAANKSLGEEDCLGGKIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLT RSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGSEDKTSKSEHNEDAASRSVLQEKGSVNGNLTRSFKSLDNSPDAPSAISIPTSSTSPVGGNLRNQS GFSFMGSSELDGITQGSPKKPRSHDLIQSPTSVPSINMDIKPGEANNEQVSMKFGDERQSRDGYSFIGGQTNFIGGFGQYPMGEIGRFDGEQFTPRFSGN GVSLTLGLPHCENLSLSGTHQTFLPNQNIQLGRRVEIGEPNEYGALNTSTPHSSTAYESIDIQNRKRFIAQLLPDFVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.006G203000 [exp]	0	1
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.016G069700 [exp]	1.00	0.9267	Pt-BLH1.2
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	1.41	0.9171
AT3G54000			unknown protein		Potri.006G093000 [exp]	1.73	0.9091
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.001G216600 [exp]	2.64	0.8921
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	4.47	0.9037
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	4.89	0.8951
AT3G57990			unknown protein		Potri.016G046900 [exp]	5.65	0.9081
AT5G15330		ATSPX4	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.017G086600 [exp]	5.65	0.8887
AT2G41870			Remorin family protein (.1)		Potri.014G058900 [exp]	6.00	0.8855
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.005G196700 [exp]	6.16	0.8619	GI.1

Compare expression of checked genes

Potri.006G203000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.