Plant FIBer expression Database

Potri.006G203200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11670 1117 / 0 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
AT4G00550 560 / 0 DGD2 digalactosyl diacylglycerol deficient 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G070200
[exp]
1380 / 0 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Potri.014G079400
[exp]
558 / 0 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021273
[exp]
1159 / 0 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10004200
[exp]
1031 / 0 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10029403
[exp]
836 / 0 AT3G11670 803 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10013576
[exp]
565 / 0 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10040927
[exp]
531 / 0 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
Lus10009820
[exp]
396 / 1e-130 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
Lus10029404
[exp]
298 / 2e-96 AT3G11670 298 / 7e-97 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10033686
[exp]
189 / 6e-56 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10004199
[exp]
0 / 1 ND 42 / 2e-11
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF00534 Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence
>Potri.006G203200.1 pacid=42770424 polypeptide=Potri.006G203200.1.p locus=Potri.006G203200 ID=Potri.006G203200.1.v4.1 annot-version=v4.1
ATGGAAACCACTTCAACATCAACGAGAACCAACAGCAACAACACGCCTTTCTCTTTACTTTCACGAGGATGGAAAGAAGTCCGTGACTCAGCCGACGCCG
ATCTCCAACTCATGAGAGCACGAGCCAACTCATTCAAGAATTTAGCCAACTCATTCGATCGCGAAATCGAAAATTTCTTTAATTCAGCTTCAATTGCATC
CTTCTCTGTACCTTCACCGCTCAAATCCTCTACTTCACCTACAGAAGTTGATTTTGTGAAGAAGCTGCGGCCAAAATTTTCCGAAATTCGGAGAGTTTAT
TCGGCTCCGGAGATAAGTAAGAAGGTTTTAGAGAGGTGGGGGCCGAGAGCGAAGTTAGGGATTGATTTGTCGGCGATAAAGAATGCTATTGTGGCGGGGG
AGAAGGAAGGAGAGGAGAGAAGAGGGGTTGTGGGTCTTGATAGGAGGAGGAGATTGGGGTTTAGGGAGTTCTGGGGGGAAGGGAAGGAGGGAGGAGGAGG
GCAATTTGGGGAATGGAAGCCAATACGGGTTTTGAAAAGGAGGTTGAGGGAATTTGAGAAGAAAAGTGAGTTCGGTGAGATATTTGGTGGGTTTAAGAAT
AGCGAGTTTGTGGAGAAACTGAAGTCTAGCTTGAAAGCAATCCACAAGGAGCCTCAGGAGTCAAAGGAAGTACCACCACTGGATGTCCCTGAACTATTGG
CATATTTGGTCAGGCAATCTGAGCCATTCTTGGACCAACTTGGTGTCAGAAAAGATGTTTGTGACAAGATAGTGGAGAGCTTGTGTAGTAGTCGCAAGAA
CCAACTTTTGTTACCCTCGCTGTCTTCAGGAGAATCGACCCTCCTTGACGAGAATGCAAATGATGAACTGGATTTAAGAATAGCCAGTGTTCTTCAAAGT
ACAGGGCATTGTTATGATGGAGGCTTTTGGACTGACTTATCAAAGCATCACCCATCTGATAGGAAGAGGCATGTTGCAATTGTCACAACTGCTAGTCTTC
CATGGATGACTGGGACAGCTGTTAATCCACTTTATCGAGCAGCATATTTAGCAAAGTCTGAAAAGCAAAATGTTACCCTGCTGGTTCCATGGCTTTGTAA
GTCAGATCAAGAGCTAGTTTATCCTAACAATCTCACTTTTACTTCACCAGAAGAGCAGGAGAATTATATACGAAACTGGCTTGAGGAAAGGATTGGCTTT
AAAGCTGATTTTAAGATCTCGTTTTATCCCGGAAAGTTTGCAAAAGAAAGGAGAAGCATAATACCTGCTGGAGATACTTCCCAGTTCATTCCATCAAAAG
ATGCTGACATTGCCATCCTGGAAGAGCCAGAACACCTGAATTGGTATCACCATGGAAAGCGTTGGACTACGAAGTTCAATCATGTTGTTGGTGTTGTCCA
CACAAATTATCTAGAATATATCAAGAGGGAGAAGAATGGGGCTCTCCAAGCATTCTTCGTCAAACATATAAACAACTTGGTTACACGAGCATACTGCCAC
AAGGTCCTTCGCCTTTCTGCTGCCACCCAGGATTTACCGAAGTCTGTCATTTGCAATGTTCATGGTGTGAATCCAAAGTTTTTGAAAATTGGGGAAAAAG
TTGCAGCTGAAAGTGAACTTGGGCAGCAAGCCTTCTCAAAAGGAGCATATTTCTTAGGCAAGATGGTATGGGCCAAGGGATACAAGGAGTTGATAGATTT
GTTGGCAAAGCACAAGAATGATCTTGATGGCTTCAATTTAGATGTTTTTGGAAATGGAGAAGATGCAAATGAAGTTCAGACTACAGCTAAAAGATTGGAT
TTGAATCTCAACTTTCTGAAAGGAAGAGACCATGCGGATGATTCTCTTCACGGGTACAAAGTTTTCATAAATCCTAGTCTCAGTGATGTGCTCTGCACGG
CCACTGCTGAGGCACTAGCAATGGGAAAATTTGTTGTATGTGCGGACCACCCATCAAATGAGTACTTCAGGTCATTTCCCAACTGTTTGACTTACAAGAC
ATCTGAGGACTTTGTTGCAAGAGTCAAGGAAGCATTAGCAAATGAACCTCATCCTCTTACTCCAGAGCAAATTTACAACCTCTCATGGGAGGCAGCCACC
CAGAGATTTATGCAGTATTCGGAGCTTGATAGAGTCTTGGATCCTGAAAAAGATGATGTAAAACTGAGCAAAACTAATGGGAGGAGCATCACAAAAGCAG
TTTCAACGCCTAATATGTCAGAGATGGTTGATGGAGGGTTGGCGTTTGCCCACTACTGCCTCACAGGGAATGAGCTTCTTAGACTCTGTACTGGAGCCAT
ACCCGGGACACGGGACTATGACAAGCAGCATTGTAAAGACCTCCATCTCTTGCCTCCACAAGTAGAAAACCCGATCTATGGATGGTAA
AA sequence
>Potri.006G203200.1 pacid=42770424 polypeptide=Potri.006G203200.1.p locus=Potri.006G203200 ID=Potri.006G203200.1.v4.1 annot-version=v4.1
METTSTSTRTNSNNTPFSLLSRGWKEVRDSADADLQLMRARANSFKNLANSFDREIENFFNSASIASFSVPSPLKSSTSPTEVDFVKKLRPKFSEIRRVY
SAPEISKKVLERWGPRAKLGIDLSAIKNAIVAGEKEGEERRGVVGLDRRRRLGFREFWGEGKEGGGGQFGEWKPIRVLKRRLREFEKKSEFGEIFGGFKN
SEFVEKLKSSLKAIHKEPQESKEVPPLDVPELLAYLVRQSEPFLDQLGVRKDVCDKIVESLCSSRKNQLLLPSLSSGESTLLDENANDELDLRIASVLQS
TGHCYDGGFWTDLSKHHPSDRKRHVAIVTTASLPWMTGTAVNPLYRAAYLAKSEKQNVTLLVPWLCKSDQELVYPNNLTFTSPEEQENYIRNWLEERIGF
KADFKISFYPGKFAKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTTKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNLVTRAYCH
KVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVAAESELGQQAFSKGAYFLGKMVWAKGYKELIDLLAKHKNDLDGFNLDVFGNGEDANEVQTTAKRLD
LNLNFLKGRDHADDSLHGYKVFINPSLSDVLCTATAEALAMGKFVVCADHPSNEYFRSFPNCLTYKTSEDFVARVKEALANEPHPLTPEQIYNLSWEAAT
QRFMQYSELDRVLDPEKDDVKLSKTNGRSITKAVSTPNMSEMVDGGLAFAHYCLTGNELLRLCTGAIPGTRDYDKQHCKDLHLLPPQVENPIYGW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11670 DGD1 DIGALACTOSYL DIACYLGLYCEROL DE... Potri.006G203200
[exp]
0 1
AT1G46768 AP2_ERF RAP2.1 related to AP2 1 (.1) Potri.014G025200
[exp]
2.44 0.9045 DREB36,DREB1.2
AT5G15330 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAI... Potri.017G086600
[exp]
2.44 0.8889
AT3G50700 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1... Potri.014G180600
[exp]
3.60 0.8516
AT1G51700 DOF ADOF1, AtDof1. ... DOF zinc finger protein 1 (.1) Potri.003G034200
[exp]
3.74 0.8681
AT1G54130 AT-RSH3, RSH3, ... RELA/SPOT homolog 3 (.1) Potri.001G168200
[exp]
6.24 0.8851 Pt-RSH2.3
AT3G22750 Protein kinase superfamily pro... Potri.005G213200
[exp]
6.92 0.8847
AT1G11360 Adenine nucleotide alpha hydro... Potri.019G119400
[exp]
7.74 0.8541
AT3G54000 unknown protein Potri.006G093000
[exp]
8.83 0.8693
AT2G35940 HD BLH1, EDA29 embryo sac development arrest ... Potri.006G203000
[exp]
10.58 0.8675
AT3G57990 unknown protein Potri.016G046900
[exp]
11.18 0.8839

Potri.006G203200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.