Plant FIBer expression Database

Potri.006G203400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06360 500 / 0 Ribosomal protein S8e family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G070400
[exp]
532 / 0 AT5G06360 498 / 0.0 Ribosomal protein S8e family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021274
[exp]
467 / 7e-169 AT5G06360 469 / 5e-170 Ribosomal protein S8e family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01201 Ribosomal_S8e Ribosomal protein S8e
Representative CDS sequence
>Potri.006G203400.1 pacid=42769107 polypeptide=Potri.006G203400.1.p locus=Potri.006G203400 ID=Potri.006G203400.1.v4.1 annot-version=v4.1
ATGCCGCAAGGAGATTACATAGAGCTGCACAGGAAGAGGCATGGATACCGCCTCGACCACTTCGAGCGCAAGCGCAAGAAGGAGGCGCGTGAAGTCCACA
AACACTCTGAGAGAGCCCAGAAGGCATTGGGTATTAAAGGAAAGATGATTGCGAAGAAAAATTATGCTGAGAAGGCTCTCATGAAGAAAACATTGGCTAT
GCATGAGGAGTCAACATCTAGGCGCAAGGTGGATGATGACGTTCAAGATGGAGCTGTTCCTGCCTATCTTTTGGATCGTGAAAACACTACACGAGCAAAG
ATTCTTAGCAACAGTATAAAGCAAAAGAGGAAAGAGAAGGCTGGAAAATGGGAGGTCCCTCTACCTAAGGTGAGGCCTGTTGCAGAGGATGAAATGTTTA
AAGTTATTCGATCTGGGAAACGGAAGACCAAGCAGTGGAAGAGAATGGTCACAAAGGCCACATTTGTGGGACCAGGTTTTACAAGAAAACCTCCCAAGTA
TGAGCGTTTTATTCGTCCTACTGGGTTGCGATTTACTAAGGCTCATGTTACACACCCTGAACTCAAGTGCACCTTCAACCTTGAGATCATTGGAGTAAAG
AAAAACCCTAATGGTCCTACGTACACATCTCTTGGTGTTATCACTAAGGGCACTATCATTGAGGTGAATGTTAGTGAATTAGGTCTTGTCACACCAGCTG
GTAAAGTTGTATGGGGGAAGTATGCTCAAGTAACAAATAACCCAGAGAATGATGGTTGTATAAATGCAGTTCTACTTGTTTAG
AA sequence
>Potri.006G203400.1 pacid=42769107 polypeptide=Potri.006G203400.1.p locus=Potri.006G203400 ID=Potri.006G203400.1.v4.1 annot-version=v4.1
MPQGDYIELHRKRHGYRLDHFERKRKKEAREVHKHSERAQKALGIKGKMIAKKNYAEKALMKKTLAMHEESTSRRKVDDDVQDGAVPAYLLDRENTTRAK
ILSNSIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLEIIGVK
KNPNGPTYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06360 Ribosomal protein S8e family p... Potri.006G203400
[exp]
0 1
AT5G64680 unknown protein Potri.001G068500
[exp]
2.44 0.8336
AT1G09810 ECT11 evolutionarily conserved C-ter... Potri.004G223800
[exp]
2.44 0.8172
AT1G27390 TOM20-2 translocase outer membrane 20-... Potri.001G054900
[exp]
2.82 0.8279 Pt-TOM20.1
AT5G46160 Ribosomal protein L14p/L23e fa... Potri.010G022800
[exp]
5.29 0.7973 RPL14.1
AT5G15750 Alpha-L RNA-binding motif/Ribo... Potri.017G101200
[exp]
6.00 0.7889
AT1G76940 RNA-binding (RRM/RBD/RNP motif... Potri.002G070200
[exp]
6.00 0.7365 RBP1.2
AT3G15460 Ribosomal RNA processing Brix ... Potri.001G403100
[exp]
6.24 0.7706
AT1G20220 Alba DNA/RNA-binding protein (... Potri.005G194600
[exp]
7.00 0.7848
AT4G15770 RNA binding (.1) Potri.010G024400
[exp]
7.74 0.7730
AT5G64650 Ribosomal protein L17 family p... Potri.005G061700
[exp]
11.95 0.7715

Potri.006G203400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.