Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01820 528 / 5e-173 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 521 / 3e-170 TMK1 transmembrane kinase 1 (.1) AT3G23750 478 / 7e-154 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 456 / 5e-146 Leucine-rich repeat protein kinase family protein (.1) AT2G17220 251 / 2e-74 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G76370 241 / 3e-71 Protein kinase superfamily protein (.1) AT1G20650 236 / 2e-69 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G01020 235 / 9e-69 Protein kinase superfamily protein (.1) AT3G58690 233 / 3e-68 Protein kinase superfamily protein (.1) AT3G20530 232 / 7e-68 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070500 [exp] 1552 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.001G217700 [exp] 662 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.009G020400 [exp] 660 / 0 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 552 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 551 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 537 / 1e-176 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G137801 [exp] 525 / 6e-172 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 495 / 2e-160 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 477 / 1e-153 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021275 [exp] 1285 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 1262 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 548 / 1e-180 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 546 / 4e-179 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 513 / 4e-167 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019131 [exp] 495 / 1e-160 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 487 / 9e-157 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 485 / 1e-156 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10001851 [exp] 479 / 3e-154 AT2G01820 693 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013342 [exp] 478 / 1e-153 AT2G01820 685 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G203500.1 pacid=42768749 polypeptide=Potri.006G203500.1.p locus=Potri.006G203500 ID=Potri.006G203500.1.v4.1 annot-version=v4.1 ATGAGAAAACACCACAAAAAGCTTGTTTTGGCACTCTTCTCTCTTTTTACAGTGGTTTTTAGTGCCACTGACCCCAATGACTTTGCAATTATCAAAGCAT TCAGAGAAGGGTTAGAGAACCCTGAACTTTTAGAGTGGCCTGCTGATGGTGATGATGACCCATGTGGTCAATCTTGGAAACATGTTTTCTGTTCTGGTTC TAGGGTCACACAAATCCAGGTTCAGAATATGAGCTTGAAAGGTACTTTGCCTCAAAACCTCAACCAGCTTACAAAACTCCAAAGGTTAGGCCTTCAAAGG AACCAATTCACTGGAGCTTTACCATCCTTAAGTGGGCTATCGGAGCTACAGTCTGTTTATTTGGATTTCAATCAGTTTGATTCAATTCCTTCTGATTGTT TTGATCGTTTGGTGAGCTTGCAATCCCTGGCATTGGATAAAAATAATTTCAATGCGAGTACAGGGTGGTCATTCCCTGAGGGTTTGCAAGATTCTGCACA ATTGACCAATCTTTCTTGTATGTTTTGTAATTTGGCCGGTCCCTTGCCTTATTTTCTAGGGGCCTTGTCATCTCTACAGAACTTGAGACTTTCGGGCAAT AATTTATCTGGTGAGATTCCCGCGAGCTTCAAACGAAGCACGTCTTTACAGAATCTGTGGTTAAATGATCAGAATGGAGGTGGGTTGAGTGGCACTCTTG ACGTGGTGACAACAATGGATTCAGTTAATGTTCTTTGGCTTCATGGGAACCAGTTCACAGGTACAATTCCAGAGAGCATTGGTAATTTGACTGTTTTGCA GGATCTCAATCTTAATGGTAACAAACTTGTTGGATTCGTTCCGGATAGCCTGGCAAAAATGCCATTAGAGCATTTGGATTTGAACAATAATCAGTTAATG GGTCCAATTCCAAATTTTAAAGCAACTGAAGTGTCGTATGCTTCAAATGCATTTTGTCAATCCACTCCAGGTGTCCCTTGTGCACCAGAAGTTATGGCGC TTCTAGAGTTTCTCGGTTCGCTGAATTACCCCTCAAGATTAGTTTCTTCATGGACCGGTAATGACCCGTGTTCATGGCTGGGATTGGCTTGTCACAATGG TAATGTTAATTCCATTGCTTTGCCTAGCAGTAATCTTAGTGGTACCTTGAGTCCTTCAGTTGCAAGGCTAGGTTCTCTTATTCAAATCAAACTCGGGAGT AACAATCTAAGCGGTCAAGTTCCAGAAAACTGGACTAGCTTGACATCTTTGAAAACATTAGATCTCAGTACCAACAACATTTCCCCCCCATTACCAAAAT TTGCTGACACTGTGAATGTTGTCACTGTGGGCAATCCTCTACTTACTGGTGGTAGTCCGTCCAATCCAAACCCCTCTCCTGGATCCGGAAGTTCAGGTTC TCCACCCAGCAACCCCTCATCACCAACCAAAGGCACAGGTTCTAGTCCCGGGGATTCTTCAGAACCAGTGAAACCCAAGCGGTCCACTTTAGTTGCAATT ATAGCCCCGGTTGCTAGTGTTGTAGTTGTTGCTCTTCTGGCCATTCCTCTGTCTATCTATTGTTACAAGAAGAGGAAAGATACCTTCCAGGCTCCAAGTT CCCTTGTCATTCATCCAAGAGATCCATCTGATTCAGACAACACAGTTAAGATTGTGGTTGCCAGTAACACCAACGGAAGCGCATCTACAATAACAGGGAG TGGTTCTGCAAGCAGGAATAGCAGTGGCGTTGGCGAGTCTCATGTCATTGAAGCAGGAAATTTGGTCATATCAGTTCAAGTTCTTCGAAATGTGACTAAG AATTTTGCCTCGGAGAATGAGCTTGGCCGTGGTGGCTTTGGGGTGGTTTATAAAGGAGAACTTGATGATGGAACAAAAATAGCTGTTAAAAGAATGGAGT CTGGCGTGATCAGCAGCAAAGCTATAGATGAATTCCAAGCTGAGATTGCAGTTCTTTCAAAGGTACGGCACCGTCATTTGGTTTCACTTTTGGGCTACTC TGTTGAAGGCTATGAAAGAATCCTTGTTTATGAGTACATGCCTCAAGGAGCTTTAAGCAAGCATCTTTTCCACTGGAAGAGCTCGAAGTTGGAGCCTCTT TCTTGGAAGAGGAGGCTAAATATTGCATTGGATGTTGCTAGAGGAATGGAATATCTTCATAATTTGGCTCACCGGAGCTTCATACACAGAGATCTTAAAT CTTCAAACATCTTACTTGGTGATGATTTCAGAGCAAAAGTTTCCGATTTTGGATTGGTGAAACTTGCTCCTGATGGAGAGAAATCTATGGTGACCAGGCT TGCTGGGACCTTTGGATACTTGGCACCTGAGTATGCTGTGACGGGAAAAATCACAACCAAGGTCGATGTCTTTAGTTTCGGGATTGTGCTAATGGAGTTA TTGACTGGATTGATGGCACTCGACGAGGACAGACCAGAGGAAAGCCAGTACCTGGCTGCATGGTTTTGGCGTATCAAATCAGATAAGCAGAAACTTAGGG CTGCTATTGACCCTGCCCTTGATGTGAAAGACGAAACATTTGAGAGTATCTCCATCATTGCTGAACTGGCTGGGCACTGCACGGCAAGGGAGCCCAACCA AAGACCAGATATGGGCCACGCTGTGAATGTGCTGGCCCCACTTGTTGAGAAATGGAAACCTATGGACGATGATACTGAAGATTATTGTGGTATCGATTAC AGCCTCCCTCTTAACCAGATGGTGAAGGGCTGGCAGGAAGCGGAAGGAAAGGACTTGAGTTATGTGGACTTAGAAGACAGCAAGAGTAGTATTCCAGCAA GGCCAACTGGCTTTGCGGAGTCTTTCACTTCTGCTGATGGGCGGTAG
AA sequence Show only first row Show all	>Potri.006G203500.1 pacid=42768749 polypeptide=Potri.006G203500.1.p locus=Potri.006G203500 ID=Potri.006G203500.1.v4.1 annot-version=v4.1 MRKHHKKLVLALFSLFTVVFSATDPNDFAIIKAFREGLENPELLEWPADGDDDPCGQSWKHVFCSGSRVTQIQVQNMSLKGTLPQNLNQLTKLQRLGLQR NQFTGALPSLSGLSELQSVYLDFNQFDSIPSDCFDRLVSLQSLALDKNNFNASTGWSFPEGLQDSAQLTNLSCMFCNLAGPLPYFLGALSSLQNLRLSGN NLSGEIPASFKRSTSLQNLWLNDQNGGGLSGTLDVVTTMDSVNVLWLHGNQFTGTIPESIGNLTVLQDLNLNGNKLVGFVPDSLAKMPLEHLDLNNNQLM GPIPNFKATEVSYASNAFCQSTPGVPCAPEVMALLEFLGSLNYPSRLVSSWTGNDPCSWLGLACHNGNVNSIALPSSNLSGTLSPSVARLGSLIQIKLGS NNLSGQVPENWTSLTSLKTLDLSTNNISPPLPKFADTVNVVTVGNPLLTGGSPSNPNPSPGSGSSGSPPSNPSSPTKGTGSSPGDSSEPVKPKRSTLVAI IAPVASVVVVALLAIPLSIYCYKKRKDTFQAPSSLVIHPRDPSDSDNTVKIVVASNTNGSASTITGSGSASRNSSGVGESHVIEAGNLVISVQVLRNVTK NFASENELGRGGFGVVYKGELDDGTKIAVKRMESGVISSKAIDEFQAEIAVLSKVRHRHLVSLLGYSVEGYERILVYEYMPQGALSKHLFHWKSSKLEPL SWKRRLNIALDVARGMEYLHNLAHRSFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSMVTRLAGTFGYLAPEYAVTGKITTKVDVFSFGIVLMEL LTGLMALDEDRPEESQYLAAWFWRIKSDKQKLRAAIDPALDVKDETFESISIIAELAGHCTAREPNQRPDMGHAVNVLAPLVEKWKPMDDDTEDYCGIDY SLPLNQMVKGWQEAEGKDLSYVDLEDSKSSIPARPTGFAESFTSADGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.006G203500 [exp]	0	1
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.002G207800 [exp]	1.00	0.9060	Pt-TIR1.1,FBL2
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116000 [exp]	4.24	0.8780
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.017G061600 [exp]	8.94	0.8951	FBL4,IPS1.1
AT5G02970			alpha/beta-Hydrolases superfam...		Potri.016G086200 [exp]	9.05	0.8269
AT2G26900		BASS2	bile acid:sodium symporter fam...		Potri.018G074400 [exp]	9.16	0.8665
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.012G080400 [exp]	10.00	0.8606
AT5G66600			Protein of unknown function, D...		Potri.005G130000 [exp]	10.58	0.8180
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.008G062400 [exp]	12.04	0.8662
AT3G06840			unknown protein		Potri.008G219500 [exp]	18.33	0.8544
AT3G03770			Leucine-rich repeat protein ki...		Potri.019G039000 [exp]	18.73	0.8275

Compare expression of checked genes

Potri.006G203500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.