Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06340 253 / 3e-85 ATNUDX27 nudix hydrolase homolog 27 (.1) AT3G10620 245 / 3e-82 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G30110 187 / 5e-60 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT5G47650 42 / 0.0001 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 42 / 0.0002 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47240 41 / 0.0005 ATNUDT8 nudix hydrolase homolog 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070900 [exp] 407 / 6e-146 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.008G017900 [exp] 243 / 4e-81 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.010G242100 [exp] 236 / 1e-78 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.008G130100 [exp] 194 / 5e-63 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G112000 [exp] 192 / 5e-62 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.003G106100 [exp] 47 / 6e-06 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 45 / 2e-05 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.018G069100 [exp] 45 / 3e-05 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1) Potri.014G168400 [exp] 43 / 8e-05 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021279 [exp] 257 / 1e-86 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 255 / 1e-85 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 252 / 1e-84 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10021278 [exp] 251 / 4e-84 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10018988 [exp] 249 / 5e-84 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10029398 [exp] 241 / 3e-80 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 234 / 1e-77 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10033839 [exp] 232 / 8e-77 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10003714 [exp] 187 / 3e-60 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 160 / 9e-45 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.006G203700.8 pacid=42768676 polypeptide=Potri.006G203700.8.p locus=Potri.006G203700 ID=Potri.006G203700.8.v4.1 annot-version=v4.1 ATGGAGTCGTGTCATAGTATTGTCAGGAGTTATTATATCTATCGATTTGTAACCCCAAATTGCCCTATAAATTTGAACAAATTTGCGAGCGTACCACTGT CTGGCTCTTCGTGCGCCGCCTTATCCTTAACAAGGAGTAGAAGGAGAAGCAGAAGAAGGGAGTTGCCGCCGTCAATGGAGACGCCACCGGATGGGTATAG AAGAAATGTGGGGATTTGTCTCGTTAATTCCTCTAAAAAGATATTTACTGCTTTGAGGATAAACATCTCGGACACGTGGCAGATGCCTCAGGGTGGTGCT GGTGAGGGTGAAGACCTATTGACTGCAGCCATGAGGGAATTGAGGGAAGAAACCGGTGTTACTTCAGCTGAATTTGTGGCAGAGGCACCCTACTGGCTTA CTTATGATTTTCCCCCGCAAACCAGAGAGAGACTCAGTCGTAGATGGGGTACCAATTACAAAGGTCAAACACAGAAGTGGTTTCTTTTCAAGTTCACTGG GAAGGAGGATGAGATAAATCTTTTGGGTGATGGAAGTGAAACTCCAGAATTTAAGGACTGGGCATGGTTGTTGCCGGAAAGAGTATTGGAGCTTGCTGTG GATTTCAAGAAGCCAGTCTATGAACAAGTTATGAAGGTATTTGGTCCATATCTTCAGGCAGATGCGGATGAAGATAGTGCAGCACAAAATGAAACCGAGG CCGAAGTGTACGTGGAGTCAACTCCTGTGTAA
AA sequence Show only first row Show all	>Potri.006G203700.8 pacid=42768676 polypeptide=Potri.006G203700.8.p locus=Potri.006G203700 ID=Potri.006G203700.8.v4.1 annot-version=v4.1 MESCHSIVRSYYIYRFVTPNCPINLNKFASVPLSGSSCAALSLTRSRRRSRRRELPPSMETPPDGYRRNVGICLVNSSKKIFTALRINISDTWQMPQGGA GEGEDLLTAAMRELREETGVTSAEFVAEAPYWLTYDFPPQTRERLSRRWGTNYKGQTQKWFLFKFTGKEDEINLLGDGSETPEFKDWAWLLPERVLELAV DFKKPVYEQVMKVFGPYLQADADEDSAAQNETEAEVYVESTPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Potri.006G203700 [exp]	0	1
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	7.74	0.8719	CNX2.1
AT4G17540			unknown protein		Potri.003G082200 [exp]	12.64	0.8760
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.010G208000 [exp]	13.49	0.8727
AT3G57280			Transmembrane proteins 14C (.1...		Potri.001G139800 [exp]	20.07	0.8599
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Potri.005G224000 [exp]	20.44	0.8823
AT2G15580			RING/U-box superfamily protein...		Potri.018G114500 [exp]	20.78	0.8749
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.001G189800 [exp]	25.27	0.8456
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Potri.015G004000 [exp]	30.85	0.8329
AT5G60840			unknown protein		Potri.012G065400 [exp]	40.39	0.8750
AT5G64970			Mitochondrial substrate carrie...		Potri.005G165200 [exp]	45.60	0.8346

Compare expression of checked genes

Potri.006G203700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.