Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52340 988 / 0 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 892 / 0 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52350 596 / 0 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT5G50380 321 / 2e-100 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 298 / 4e-92 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 296 / 8e-92 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 291 / 1e-89 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G58430 283 / 1e-86 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT5G13990 261 / 1e-77 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT5G13150 257 / 1e-76 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071000 [exp] 1125 / 0 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.008G017800 [exp] 916 / 0 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 910 / 0 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.012G097100 [exp] 323 / 2e-101 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 323 / 2e-101 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 315 / 1e-98 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G166400 [exp] 315 / 1e-98 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 307 / 1e-95 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 299 / 1e-92 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021283 [exp] 952 / 0 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10043432 [exp] 891 / 0 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10034151 [exp] 877 / 0 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10013163 [exp] 320 / 9e-103 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10008126 [exp] 320 / 3e-100 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 319 / 6e-100 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 304 / 1e-94 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10040872 [exp] 252 / 8e-75 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 251 / 3e-74 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10005436 [exp] 250 / 5e-74 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.006G203900.1 pacid=42767783 polypeptide=Potri.006G203900.1.p locus=Potri.006G203900 ID=Potri.006G203900.1.v4.1 annot-version=v4.1 ATGGGGGTGCCTCAAACAATGGAGGCGCTAAGAGAACGAGCTGAATTCATAAAAGAATCATTACAAAAAAGCCAAACCATCACTGATAACATGGTCTCCA TCCTTGGCTCCTTCGACCATCGTCTCTCCGCCTTAGAAACCGCCATGCGTCCCACTCAGATAAGGACGCATTCGATTAGAAGAGCACATGAAAATATTGA TAAAACGTTGAAGGCAGCAGAGGTCATTTTATCTCAATTTGACCTCACGCGAAAGGCAGAGGCTAAGATACTGAGAGGGCCACATGAAGATTTGGAAAGT TATTTAGAAGCGATTGATCAGCTAAGAAGCAATGTGAAATTTTTTAGCAGCAACAAAAGCTTTAAATGCAGTGATGGCGTGCTTAATCATGCCAATCAGT TACTTGCTAAAGCTATTTCTAAGCTTGAAGAGGAGTTTAGAAAGCTTTTATCTAATTACAGCAAGCCGGTGGAACCTGATCGACTTTTTGAATGTCTTCC TGACTCTCTACGTCCATCATCATCTGGATCGCCTAGGAACCATGGTGATGGCAGCGGCAAGAGTCTTATTGATCACCAAGAAAAGAGCTTAGAAAATGCT GTTTACACGCTCCCAATTCTTATTCCGCCGAGGGTTCTGCCACTGCTACATGATTTAGCTCAACAAATGGCTCAAGCTGGTCATCAACAACAGCTATTTA GAATCTACAGGGACACTCGTGCTTCAGTTTTGGAACAAAGCCTCAGGAAGTTAGGAGTTGAGAGACTTGGTAAAGATGATGTCCAGAAAATGCAGTGGGA GGTCCTGGAGGCTAAGATTGGGAATTGGATACATTATATGCGGATTGCTGTTAAACTGCTATTTGCTGGCGAAAAGAAAATTTGTGATCAAATACTTGAT GGGGTTGATTCACTCCGGGATCAATGTTTTGCTGAAGTCACCGTAAACAGTGTGTCTGTGCTTCTTAGTTTTGGAGAGGCCATAGCCAAAAGCAAGAGAT CACCAGAAAAACTATTTGTTCTATTAGATATGTATGAGATTATGCGAGAACTTCACTCAGAGACTGAATTACTCTTTGGAAGTAAAGCCTGCATTGAAAT GCGGGAGGCTGCATTGAGTTTAACGAAGCGACTAGCTGAAACGGTTCAAGAGACCTTTGTTGATTTTGAAGAAGCTGTAGAAAAAGATGCTACCAAAACC ACTGTTCTAGATGGAACCGTCCATCCTCTGACTAGCTATGTGATAAATTACGTGAAGTTTCTCTTTGATTACCAATCTACTTTGAAACAGCTCTTTCGAG AGTTTGATGCAAGTGATCCGGATGCTCTGTTGGCATCTGTAACAACAAGGATTATGCAGGCTCTTCAAAATAGCCTAGATGGGAAATCAAAGCAGTATAG AGATCCTGCTCTGACTCAATTATTTCTTATGAACAACATTCACTATATAGTGAGATCCGTGCAGAGGTCAGAAGCGAAGGATTTATTGGGTGATGATTGG GTGCAAATACACAGAAGGATAGTGCAACAGCATGCTAATCAGTATAAGAGAATTTCCTGGGCAAAGATCCTGCAGTGTCTCTCTGTTCAAGGTGGTGCGT CAGGCGGTGGCAGTGCAATGGGAGCTGATGGCAGTGCCAGTGGAATTTCAAGAGCAATGGTGAAAGATAGATTCAAGACCTTCAATGCCCAATTTGAGGA GCTTCATCAAAGACAATCTCAATGGACTGTTCCAGACAGCGAGTTGCGCGAGTCTTTGAGGCTGGCTGTTGCTGAAGTTCTCTTGCCTGCATATAGGTCA TTTCAAAAGCGTTTTGGGCCTATGGTTGAGAATGGAAAAAACCCTCAGAAGTATATTAGGTACTCTCCTGAAGTCCTTGATCGCATGATGAACGAGTTCT TTGAGGGTAAGACATGGAATGAGCAAAAACGGTAA
AA sequence Show only first row Show all	>Potri.006G203900.1 pacid=42767783 polypeptide=Potri.006G203900.1.p locus=Potri.006G203900 ID=Potri.006G203900.1.v4.1 annot-version=v4.1 MGVPQTMEALRERAEFIKESLQKSQTITDNMVSILGSFDHRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAEVILSQFDLTRKAEAKILRGPHEDLES YLEAIDQLRSNVKFFSSNKSFKCSDGVLNHANQLLAKAISKLEEEFRKLLSNYSKPVEPDRLFECLPDSLRPSSSGSPRNHGDGSGKSLIDHQEKSLENA VYTLPILIPPRVLPLLHDLAQQMAQAGHQQQLFRIYRDTRASVLEQSLRKLGVERLGKDDVQKMQWEVLEAKIGNWIHYMRIAVKLLFAGEKKICDQILD GVDSLRDQCFAEVTVNSVSVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSETELLFGSKACIEMREAALSLTKRLAETVQETFVDFEEAVEKDATKT TVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFREFDASDPDALLASVTTRIMQALQNSLDGKSKQYRDPALTQLFLMNNIHYIVRSVQRSEAKDLLGDDW VQIHRRIVQQHANQYKRISWAKILQCLSVQGGASGGGSAMGADGSASGISRAMVKDRFKTFNAQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRS FQKRFGPMVENGKNPQKYIRYSPEVLDRMMNEFFEGKTWNEQKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.006G203900 [exp]	0	1
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032600 [exp]	13.85	0.7845
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G069700 [exp]	19.36	0.7725
AT3G54500			unknown protein		Potri.003G200300 [exp]	29.34	0.7813
AT1G68300			Adenine nucleotide alpha hydro...		Potri.008G121800 [exp]	30.33	0.7618
AT1G80870			Protein kinase superfamily pro...		Potri.003G183100 [exp]	31.30	0.7728
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053200 [exp]	31.93	0.7481
AT5G11090			serine-rich protein-related (....		Potri.006G060700 [exp]	32.00	0.7216
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.008G091300 [exp]	34.98	0.7206
					Potri.002G006800 [exp]	35.49	0.7399
AT1G69800			Cystathionine beta-synthase (C...		Potri.017G053600 [exp]	35.87	0.7567

Compare expression of checked genes

Potri.006G203900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.