Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) AT2G27260 82 / 4e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 59 / 5e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G05220 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35980 53 / 5e-08 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 42 / 0.0001 NHL2 NDR1/HIN1-like 2 (.1) AT3G52470 41 / 0.0004 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071200 [exp] 209 / 1e-66 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.009G019800 [exp] 74 / 3e-15 AT2G27260 96 / 1e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G218300 [exp] 66 / 1e-12 AT2G27260 94 / 6e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 61 / 5e-11 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 53 / 5e-08 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071100 [exp] 52 / 7e-08 AT3G52460 59 / 3e-10 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G039400 [exp] 50 / 7e-07 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 49 / 7e-07 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 49 / 9e-07 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021284 [exp] 142 / 3e-40 AT3G52460 164 / 1e-48 hydroxyproline-rich glycoprotein family protein (.1) Lus10034173 [exp] 93 / 5e-22 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043411 [exp] 91 / 2e-21 AT2G27260 148 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10005216 [exp] 86 / 2e-19 AT2G27260 152 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006754 [exp] 70 / 5e-14 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020066 [exp] 66 / 1e-12 AT4G05220 261 / 6e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10004193 [exp] 65 / 3e-12 AT3G52460 95 / 3e-23 hydroxyproline-rich glycoprotein family protein (.1) Lus10013329 [exp] 53 / 8e-09 AT2G27260 89 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 49 / 1e-06 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006755 [exp] 47 / 3e-06 AT4G05220 145 / 9e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G204000.1 pacid=42769299 polypeptide=Potri.006G204000.1.p locus=Potri.006G204000 ID=Potri.006G204000.1.v4.1 annot-version=v4.1 ATGGCTTCTGAATCCAGTCACAATCAACAACACAACAAAGGAGAATATCAATCATCCGAAAGCACCCATCATGACGTTCCACCTTCAGCAAGCCATGATC TTAATCCAGGGGCAGGATATCCTCCAGCTATGGGTTATCCTCCTTCAATGGACTATCCACCACCACCACCAGGGCAATATCCAGGTTATCCACCGCCAGG TTATTATCCCTATGCACAAGCACCACCTGCAGCAGCCTATTATAACGCAACAGTACATCAACAACAAGGATATGAAAGGTCATCAGGTTTCTCACGATGC TTCCTTACAACGATAATATTCTTGACGTTGTTAATATTTACGTCAAGCATCATTATGTGGCTTGTATTGCGCCCTCAACTTCCTGTTTTTCACGTTGACA ACTTCTCGGTATCGAATCTTAATGCCACCTTGCCTACCTTCACGGCTAATTGGGAAGCGAATTTAACAGTTCGAAATCCGAATACCAGGTTGAAAATAGA ATTTAGTGAATTACAAAACTTTGTGTTTTACGAAGAAGATTATCTTCTTGCTTCAGCTATAACTTCCCGGCCTTTCTCCCTGGAAACAAAGACGAGCGGT GTAATAAATGCCAAGCTATCAGAGAATAACAAGGATAACTTGGTGGAGAACTGGGTGGTGGATAAATTGGCCAAGGAAAGGAGCAATGGATCAGTGAGTT TTAATTTCAGGATGCTGGTTTGGACTACGTTTAGATCAGGTTTATGGTGGAAAAGGAATTTAAGCATCAAAGTTATGTGTGAGGATATTCAGGTTACTTT TGTGGGTGCTTCAGGTAATGGGAATATTGCAGCCAATGGACTTAGGGACTGCTTAGTTTTTGTCTAG
AA sequence Show only first row Show all	>Potri.006G204000.1 pacid=42769299 polypeptide=Potri.006G204000.1.p locus=Potri.006G204000 ID=Potri.006G204000.1.v4.1 annot-version=v4.1 MASESSHNQQHNKGEYQSSESTHHDVPPSASHDLNPGAGYPPAMGYPPSMDYPPPPPGQYPGYPPPGYYPYAQAPPAAAYYNATVHQQQGYERSSGFSRC FLTTIIFLTLLIFTSSIIMWLVLRPQLPVFHVDNFSVSNLNATLPTFTANWEANLTVRNPNTRLKIEFSELQNFVFYEEDYLLASAITSRPFSLETKTSG VINAKLSENNKDNLVENWVVDKLAKERSNGSVSFNFRMLVWTTFRSGLWWKRNLSIKVMCEDIQVTFVGASGNGNIAANGLRDCLVFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52460			hydroxyproline-rich glycoprote...		Potri.006G204000 [exp]	0	1
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.014G015500 [exp]	1.41	0.8253
					Potri.001G210150 [exp]	1.73	0.8103
					Potri.004G122466 [exp]	4.69	0.8405
					Potri.010G079250 [exp]	11.83	0.7754
AT5G54370			Late embryogenesis abundant (L...		Potri.011G127900 [exp]	19.59	0.7645
					Potri.010G199150 [exp]	21.72	0.8057
AT3G17380			TRAF-like family protein (.1)		Potri.008G199400 [exp]	32.40	0.7891
					Potri.006G216950 [exp]	34.87	0.7871
AT1G17147			VQ motif-containing protein (....		Potri.001G378300 [exp]	36.18	0.6986
					Potri.008G214723 [exp]	37.28	0.7852

Compare expression of checked genes

Potri.006G204000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.