Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52480 74 / 4e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071700 [exp] 234 / 3e-78 AT3G52480 47 / 3e-06 unknown protein Potri.010G206100 [exp] 57 / 2e-09 AT5G59350 111 / 1e-28 unknown protein Potri.001G238300 [exp] 52 / 9e-08 AT5G59350 146 / 1e-41 unknown protein Potri.008G054400 [exp] 51 / 1e-07 AT5G59350 91 / 8e-21 unknown protein Potri.009G029300 [exp] 49 / 5e-07 AT5G59350 161 / 1e-47 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029407 [exp] 81 / 1e-18 AT3G52480 74 / 4e-16 unknown protein Lus10016965 [exp] 72 / 1e-15 AT3G11640 69 / 7e-15 unknown protein Lus10004203 [exp] 69 / 5e-14 AT3G52480 77 / 3e-17 unknown protein Lus10023421 [exp] 62 / 2e-11 AT5G59350 115 / 2e-30 unknown protein Lus10040302 [exp] 59 / 4e-10 AT5G59350 117 / 3e-31 unknown protein Lus10016568 [exp] 52 / 6e-08 AT5G59350 166 / 1e-49 unknown protein Lus10000027 [exp] 49 / 5e-07 AT3G11640 63 / 8e-13 unknown protein Lus10040839 [exp] 45 / 1e-05 AT5G59350 160 / 2e-47 unknown protein Lus10016964 [exp] 40 / 0.0001 AT3G11640 62 / 3e-13 unknown protein Lus10021290 [exp] 39 / 0.0007 AT3G11640 61 / 2e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G204400.1 pacid=42770382 polypeptide=Potri.006G204400.1.p locus=Potri.006G204400 ID=Potri.006G204400.1.v4.1 annot-version=v4.1 ATGAATGCTCTAAACAATCTAGGAACAGTGCTCACAGTTCTCTTCTCGGTCTGTCTTGCCGCCCTGGTCTTCGAGATCCTCTACGTTCTATGGCGCTGGA GAAGATTCCACCGACGTAGTGTTACAAGCTCCGGTGCTGATGGGGAGTTCAGTAGTAGCAGCGAATCACTCTACACGACGCCGTCTAAAGAGCTTCTCTA CTTCTTCTGCTGGAAAAGCCAAATGACTCGCATCGAACCGGACTCGACAACACCACCAGCGGCCTCCACGGCGGTTACGACAGTTCCTGCAGATGGTGAA GATGCGTTGGTGGAGGAGATGTTGAAGTTGCAAGGAATGTACGGACCGTCGAGAGGTTTGTTTACGATCAAGGAAGAGGACAGGGAGATGGAGATAACTG AGAACGACGAATCGTCTATAGAGAACGTTCTTGTTGAAAGTAAGGAGAGAGAGTTGAGCAGCAGTGATGTTTGTTTTGAAGAGATAGCCGTTGCTAATGA TGTGGTTGTTGATGTCGAGGTCGAGGATGTGACGACGCCGTTCTGGACGCCATGTGCGTCTCCTCAGAATTATTGTTCTCCTTCACCTTCTCCTCCTCGT GTCGTTTTAGGTGATTCTGTTGAGAACACGATGTCGTTTGCTAGCCTAGAAATTCATGGTTAG
AA sequence Show only first row Show all	>Potri.006G204400.1 pacid=42770382 polypeptide=Potri.006G204400.1.p locus=Potri.006G204400 ID=Potri.006G204400.1.v4.1 annot-version=v4.1 MNALNNLGTVLTVLFSVCLAALVFEILYVLWRWRRFHRRSVTSSGADGEFSSSSESLYTTPSKELLYFFCWKSQMTRIEPDSTTPPAASTAVTTVPADGE DALVEEMLKLQGMYGPSRGLFTIKEEDREMEITENDESSIENVLVESKERELSSSDVCFEEIAVANDVVVDVEVEDVTTPFWTPCASPQNYCSPSPSPPR VVLGDSVENTMSFASLEIHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52480			unknown protein		Potri.006G204400 [exp]	0	1
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.006G169700 [exp]	3.16	0.8274
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Potri.019G031600 [exp]	5.74	0.8107
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.016G098100 [exp]	7.74	0.7452
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G137000 [exp]	8.83	0.7668
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.012G037100 [exp]	9.21	0.7297
AT2G37050			Leucine-rich repeat protein ki...		Potri.006G132100 [exp]	10.19	0.7384
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067800 [exp]	15.19	0.7529
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	16.12	0.7765
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.007G033900 [exp]	16.24	0.7503
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.001G139900 [exp]	16.37	0.8064

Compare expression of checked genes

Potri.006G204400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.