Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52490 852 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 331 / 5e-99 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 295 / 1e-85 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 290 / 1e-84 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 288 / 2e-83 Clp amino terminal domain-containing protein (.1) AT1G07200 154 / 3e-38 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G29970 133 / 1e-31 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 129 / 3e-31 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G74310 97 / 2e-20 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 62 / 1e-09 CLPB2 casein lytic proteinase B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071800 [exp] 1316 / 0 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 795 / 0 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 786 / 0 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 337 / 6e-101 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G073800 [exp] 321 / 5e-95 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 319 / 3e-94 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 318 / 6e-94 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 160 / 4e-40 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 146 / 1e-35 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021291 [exp] 746 / 0 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016966 [exp] 666 / 0 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 364 / 5e-113 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008970 [exp] 367 / 7e-112 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 322 / 1e-95 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 302 / 3e-88 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 187 / 5e-49 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020886 [exp] 138 / 3e-33 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 122 / 4e-28 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040206 [exp] 117 / 1e-26 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Potri.006G204500.1 pacid=42767192 polypeptide=Potri.006G204500.1.p locus=Potri.006G204500 ID=Potri.006G204500.1.v4.1 annot-version=v4.1 ATGAGAGCAGGAGGTTGTACAGTGCAACAAGCTCTGACGGCAGACGCAGCAAGTGTTATTAAACAAGCAGTAACCCTTGCTAGAAGGCGAGGCCATGCCC AAGTCACTCCTCTCCATGTTGCTAACACCATGCTTTCTGCCTCCACTGGCCTATTTAGAACAGCTTGCCTTCAGTCACACTCTCATCCTCTTCAGTGCAA AGCCCTAGAGCTTTGCTTCAACGTCGCGCTTAATCGGCTCCCAGCTTCAACTTCAAGCCCCATATTAGGTACTCACTCTCAGCAGTTCCCTTCAATCTCT AATGCCTTGGTAGCAGCTTTTAAGCGCGCTCAGGCTCACCAACGGCGTGGCTCTATTGAAAACCAGCAGCAGCCACTCCTTGCAGTGAAAATAGAGTTAG AGCAGCTCATAATATCCATTTTAGACGATCCTAGTGTTAGTAGAGTCATGAGAGAAGCTGGTTTCTCTAGTACTCAAGTGAAAAGCAATGTTGAGCAAGC TGTTTCTTTAGAAATATGTTCACAAAGTGCTCCTTCTGTGAGTAGCAAGTCCAAGGAAAGCAATGGTTTGGTCCTTTCACAGTCTCCAACTTCAAGTCAA GTTGGAGCAAAAGCAACAGTTTTAGATCCAATTAAAAACGAAGATGTGATGTGTGTCATAGAGAATTTAGTGAACAAAAGGAGGAGAAGTTTTGTTATTG TTGGAGAGTCTCTGGCCAGTATAGAAGTTGTGGTGAAAGGAGTCATTGATAAGGTTCAAAAGGGAGATGTTCCTGAGGCTTTGAGGGAAGTGAAGTTTTT AACAATCCCAGTTTCTTCTTTTGGCCATTTCTCTAGGGTAGAGGTAGAACATAAACTCGAAGAGCTTAAAATCCATGTGAGAAGCTACATGGGCAAAGGA GTTGTTTTGAATTTGGGAGATCTCAAATGGGCTATTGAGAATAGGGCTAGTAGTTCATCAAGTGAGCAAGGAAGGTGCTTTTTCTGTCCAATGGAATACA TGATCATAGAGCTTGGCAAATTAGCTTGTGGAATTGGAGAGAATATTAATGGAAGATTTTGGCTTATGGGGATTGCCACTTTCCAAACTTACATGAAGTG TAAATCAGGCCATCCATCAGGAGGTACTGTTTTGGGCCTCCATCCACTTACAATTCCTGCAGGCAGCTTGCGCTTGAGTCTCATCAGTGACAGTGATCTA CGATGTCAGTCCACAAGAAACAAAGCTGGAAATGGGTCTAGCAGCTGGATTCTACATGAAGGTGGGGAAGATAAACAGCTCACTTGCTGTGCTGATTGTT CAGCCAAGTTTGAGTCAGAAGCTCGAAGCTTACCAACTAGCACCTGTGACAGTGATTCCACAACTTCTGGCCTTCCTGCATGGCTTCAACAATGCAAAAA TGAGAAAAACTTACAAAATAGTGATAATCAGAACTCTATGTCAATCAAAGATCTTTGCAGAAAATGGAACTCATTTTGCAGTTCAATCCACCGACAACAC TACTTTTCTGAGAAAACCCTCACATTTTCTTCTGTATCACCTTCTTCTTCTACTTCATATGACCAGCAATACCCTATTTTTCAACAAACCCACAATGAGT GGCCCATTGTTGAACCCAAGCAGTCATTGAGGGACCACCCTTTCTGGCTTGGTACAGGGACTCTCAACAAGTGTAGCATTAATGAACCAAGTTTGAGAAT GTACATTCCAGAACATAAAGATCATACCAAACAATTACCATTTTCATCAAATCCTAATTCTACTCCAAACTCAACTTCATCAAGTGATGTCATGGAAGTG GTGTATCTCCACAAGTTCAAGGAGCTAAATGCTGAGAACTTGAAAATCCTATCCATTGCATTGGAGAAAAAAGTGCCATGGCAGAGAGATATAATCCCTG AAATAGCAAGCACTATCTTGCAATGCCGGTCTGGCATGATAAGAAGAAAGGGGAAGATGAAAAACAGTGAATCCAAAGAAGAAACTTGGTTGTTTTTTCA AGGAGTTGATGTGGAAGCTAAAGAGAAGATAGCTAAAGAATTGGCCAGGCTAGTTTTTGGCTCCAATGACAGCTTCATTTCAGTTTCTTTAAGCAGTTTT TCTTCTACAAGAGCAGACTCGACCGAAGATTGTAGAAATAAAAGATCAAGAGATGAACAAAGTTGCAGCTATATCGAGAGATTTTCTGAGGCAGCATCAA ACAATCCACGTAGAGTTTTCTTAGTGGAAGACGTTGAGCAAGCAGATTATTGCTCTCAAATTGGTTTCAAAAGAGCTATTGAAAGTGGAAGAATAACCAA TTCCAATGGTCAAGAAGTTGGCCTTAGTGATGCTATCATCATTTTGAGCTGTGAAAGCTTCAGCTCAAGATCTAGAGCCTGCTCTCCTCCAATCAAGCAG AGAACAGATGGGTCTTATGAAGAAGAAGACAATGCTGGTGCCGGTGCTGCATTAATGGAGGACACAACCCCTTGCATATCCCTGGATTTGAATATTTCCG TTGACGATGATAACATATTGGAAGATCAATCGATTGATGACATTGGCCTCCTTGAATCCGTCGATAGACGGATTATATTCAAAATTCAAGAGTTTTGA
AA sequence Show only first row Show all	>Potri.006G204500.1 pacid=42767192 polypeptide=Potri.006G204500.1.p locus=Potri.006G204500 ID=Potri.006G204500.1.v4.1 annot-version=v4.1 MRAGGCTVQQALTADAASVIKQAVTLARRRGHAQVTPLHVANTMLSASTGLFRTACLQSHSHPLQCKALELCFNVALNRLPASTSSPILGTHSQQFPSIS NALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQSAPSVSSKSKESNGLVLSQSPTSSQ VGAKATVLDPIKNEDVMCVIENLVNKRRRSFVIVGESLASIEVVVKGVIDKVQKGDVPEALREVKFLTIPVSSFGHFSRVEVEHKLEELKIHVRSYMGKG VVLNLGDLKWAIENRASSSSSEQGRCFFCPMEYMIIELGKLACGIGENINGRFWLMGIATFQTYMKCKSGHPSGGTVLGLHPLTIPAGSLRLSLISDSDL RCQSTRNKAGNGSSSWILHEGGEDKQLTCCADCSAKFESEARSLPTSTCDSDSTTSGLPAWLQQCKNEKNLQNSDNQNSMSIKDLCRKWNSFCSSIHRQH YFSEKTLTFSSVSPSSSTSYDQQYPIFQQTHNEWPIVEPKQSLRDHPFWLGTGTLNKCSINEPSLRMYIPEHKDHTKQLPFSSNPNSTPNSTSSSDVMEV VYLHKFKELNAENLKILSIALEKKVPWQRDIIPEIASTILQCRSGMIRRKGKMKNSESKEETWLFFQGVDVEAKEKIAKELARLVFGSNDSFISVSLSSF SSTRADSTEDCRNKRSRDEQSCSYIERFSEAASNNPRRVFLVEDVEQADYCSQIGFKRAIESGRITNSNGQEVGLSDAIIILSCESFSSRSRACSPPIKQ RTDGSYEEEDNAGAGAALMEDTTPCISLDLNISVDDDNILEDQSIDDIGLLESVDRRIIFKIQEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52490			Double Clp-N motif-containing ...		Potri.006G204500 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Potri.016G071800 [exp]	1.73	0.9250
AT1G27170			transmembrane receptors;ATP bi...		Potri.005G004100 [exp]	4.79	0.8940
AT5G17980			C2 calcium/lipid-binding plant...		Potri.013G055500 [exp]	6.00	0.9065
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.018G090600 [exp]	7.93	0.9101
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.005G234500 [exp]	10.48	0.9068	Pt-COL6.1
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.012G132100 [exp]	10.95	0.9123
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G431700 [exp]	11.18	0.9167
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G277000 [exp]	13.41	0.9240
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Potri.010G061100 [exp]	13.96	0.9026
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.007G105000 [exp]	14.14	0.8647

Compare expression of checked genes

Potri.006G204500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.