Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28430 285 / 3e-84 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140800 [exp] 285 / 7e-84 AT3G28430 1019 / 0.0 unknown protein Potri.006G073600 [exp] 257 / 1e-73 AT3G28430 950 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011235 [exp] 369 / 4e-115 AT3G28430 1015 / 0.0 unknown protein Lus10018448 [exp] 210 / 3e-57 AT3G28430 892 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09758 [poplar] [flax] FPL Uncharacterised conserved protein
Representative CDS sequence Show only first row Show all	>Potri.006G204600.1 pacid=42767581 polypeptide=Potri.006G204600.1.p locus=Potri.006G204600 ID=Potri.006G204600.1.v4.1 annot-version=v4.1 ATGTGGCGTTCGCTTTGGCGATCCATCGATCGCTTCTCTCTGCAATACTTCAAACATGTAATTAATGAATTGCAGAAGATCAAAGTTGTAGATATGCACA ACAGGGAATTAGTTGTGGATCTCCTGCAGTCTATAGTAGAGATAGTTACATATGGCGACAGACAAGATTCACAGATTTTTGAGTGTTTTATGGAACACCA GGTTTTGGCAGAGTTTGTTCGTGTACTAAAAATTAGTAAAAATTCAAGAATTGAGGCACCGTTACTTCAGTATCTAAGTATAATGATTCAAAACATGGAT AGCGAATATGCAATCTACTACTGTTTAAGCAATGACTATGTCAACAATATTATAACACATCCGTACAAATTTGATGGTGGAGATCTAGCTCAGTATTATA TATCTTTCCTAAGATCAGTGAGCAACAAAATAAATGGAGACACTCTTTGCCTTCTTGTAAAGGTTCATGGGGATGCTGTTGTCTCTTTCCCCCTATACAG CGAGGCTCTTAAATTTGCTCAGCACGGGGAAAAGATGATTCAGACTGCTATACGTGCATTGACTCTCAATATATATAATGTTAGTGATGATATGGTTTAT CAGTTCATAACAACTCCTCCAGTTTCAAGTTACTTCTCAGATTTGATTCATAACTTGAAAGAGCAATGTACCCATCTAGACAACCTTGTCCATGCTTTAG AGGAGATGGGTGTTAATCAAAGAAGAAAGGAACTACTTTTAAAAACTGATAGAATTGTTGATGATCTGTACTACTTAAAGGATATTCTTTGTGTTGGTGA ATCTCGTCTGAGTAAAGTGGTCACGCAGAATGTTCTCAACTTGCTTCTCATTCCCATATTGCATCCTTTGCTTCATTCAAGGCAGAGTGATGGTTCAAAT CTATCTCCAATCACTTCTCTGTATATAGTTTCTTGTCTTATTCAAGTCATTGGTGGAAAAAGTATTGTTAACTATGTGGCTGGAGTTCTTCTATACCCTT ATATGTCCTTAAGTGTGAGAGAAGCTCGGGAAGCGTGTTTGAGCAGTGCTTTTTTCAGTAATTTTAATGATATGGAAAAATCATCATGTTCTACCGAGTC TGAAGGTGCTGAAAGTGTCAATGGGAGCCCTCTTCACAGGCATTTGCCAGAAGGCAGAATACTGGATTTTATTTTGTCTGACAATCACAGCCTCTCACTT GCGTCTCTGTTTTTATTACTTACTTTAGCAGAAAGTAAAGATCTTGAGGATTTACTGGCTTCAATGGTTAGCCTAAGTGCAATGCAGCATGGTATGGTAA TGGAGGAAAGTATACTTGTGAAGTTTATGCCTCAGATTTTAAATGCATTATTGAATGTTTTAGCAAGCGAACCACCAACCACTGTGCAAATAAAGTGGCA TACTGGATGGTTCTTGCGAAAGCTACTGGTTTTTCAAGGAATCAGGCTTGATGAACACAATTTCCATCTATTTAATACCTCATATGAGCGGTCCTGCATA TGTGTCGAGAAAGAACTTGATGGATGCTGGTTTGATCATATCATGGATGTGTTGAGAAATGAATGGGCAAGCTGTAAAACAGCTCTTGAGGAATCATCAC AATCTAAAGACCCACTTTTCCTTCTAGAGTTCACAATCTGCCAGATCGCTGATGGTGATGCAACCTCTTCCCATGTAGCTTGGCAAAGAATGGTGGATGT AGTGAAGGTCTTCATTCTGCATCTTCAGTTGAAGGCTTTTATTTCCAAAGGAGAGTTTCTCGAGAAGTCCTCACTGGACTCCATAGTGGTCCTTCCCTTC GATTCTGCGAAGAACCTAGCTTCAGGTCTTTCATCTGCTAGCTTTGGGTCGGAGGTTTCCTTAGGCTCAGGAATCCCTTGCAGGATTGCCTTCTCAAATG CAGGAATCAGAGATATTTACCTGATACCTGTGGCAAGGGGAATATCTGGGAAATTGCTTCTTGTGGAGAAACATCCCTTCCGCAGTCAAAGAGGGGTTGT AATTGCCATTGCTCCATTGGCAGGATTGAGTCCAAAGATAGACGAGGATCAGCCCACATGGCTGCATCTCAGGATAAGAGAGTTTGAACCCAGAATAAAT GGGGGTAAAAATAGAAGCTACAACACAAAGGAATTCATTCAAGTTGCAGATGGGCGATGGACAATCGGTTTCCCAAATGCAAAAGCTTGTGGCACTGCTC GATTGGCAATACTTGAGGAGACTAGTAAGCAGAGATCCTCTGTTAGGAACGCACTTGGTCCTCTTTTTCAGAATGATTATGGTGGAGGGTCTTCAAATCG TCAAGATGGGCGAGCTCTAGTGTGA
AA sequence Show only first row Show all	>Potri.006G204600.1 pacid=42767581 polypeptide=Potri.006G204600.1.p locus=Potri.006G204600 ID=Potri.006G204600.1.v4.1 annot-version=v4.1 MWRSLWRSIDRFSLQYFKHVINELQKIKVVDMHNRELVVDLLQSIVEIVTYGDRQDSQIFECFMEHQVLAEFVRVLKISKNSRIEAPLLQYLSIMIQNMD SEYAIYYCLSNDYVNNIITHPYKFDGGDLAQYYISFLRSVSNKINGDTLCLLVKVHGDAVVSFPLYSEALKFAQHGEKMIQTAIRALTLNIYNVSDDMVY QFITTPPVSSYFSDLIHNLKEQCTHLDNLVHALEEMGVNQRRKELLLKTDRIVDDLYYLKDILCVGESRLSKVVTQNVLNLLLIPILHPLLHSRQSDGSN LSPITSLYIVSCLIQVIGGKSIVNYVAGVLLYPYMSLSVREAREACLSSAFFSNFNDMEKSSCSTESEGAESVNGSPLHRHLPEGRILDFILSDNHSLSL ASLFLLLTLAESKDLEDLLASMVSLSAMQHGMVMEESILVKFMPQILNALLNVLASEPPTTVQIKWHTGWFLRKLLVFQGIRLDEHNFHLFNTSYERSCI CVEKELDGCWFDHIMDVLRNEWASCKTALEESSQSKDPLFLLEFTICQIADGDATSSHVAWQRMVDVVKVFILHLQLKAFISKGEFLEKSSLDSIVVLPF DSAKNLASGLSSASFGSEVSLGSGIPCRIAFSNAGIRDIYLIPVARGISGKLLLVEKHPFRSQRGVVIAIAPLAGLSPKIDEDQPTWLHLRIREFEPRIN GGKNRSYNTKEFIQVADGRWTIGFPNAKACGTARLAILEETSKQRSSVRNALGPLFQNDYGGGSSNRQDGRALV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28430			unknown protein		Potri.006G204600 [exp]	0	1
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.018G067700 [exp]	1.00	0.9266
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	1.41	0.9248
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.010G042200 [exp]	4.47	0.9141
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	4.47	0.9140
AT3G53540			unknown protein		Potri.016G080200 [exp]	5.09	0.9093
AT1G58350		ZW18	Putative serine esterase fami...		Potri.019G077700 [exp]	6.08	0.8897	Pt-ZW18.1
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Potri.003G001400 [exp]	6.92	0.9163	Pt-DH1.2
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.011G139300 [exp]	6.92	0.8964	ATMAK3.5
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Potri.008G054500 [exp]	7.93	0.9121	Pt-ATGGT.1
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.001G357600 [exp]	8.36	0.9133

Compare expression of checked genes

Potri.006G204600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.