Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrcPrx2cysB,Pt-BAS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06290 385 / 2e-136 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 374 / 4e-132 Thioredoxin superfamily protein (.1) AT1G48130 97 / 2e-24 ATPER1 1-cysteine peroxiredoxin 1 (.1) AT3G26060 82 / 1e-18 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072100 [exp] 457 / 1e-164 AT5G06290 390 / 3e-138 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.008G099900 [exp] 91 / 7e-21 AT1G48130 322 / 2e-111 1-cysteine peroxiredoxin 1 (.1) Potri.018G063300 [exp] 82 / 8e-19 AT3G26060 275 / 1e-94 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Potri.006G137500 [exp] 79 / 1e-17 AT3G26060 286 / 5e-99 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016969 [exp] 412 / 6e-147 AT5G06290 403 / 2e-143 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10021295 [exp] 408 / 1e-145 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10018342 [exp] 95 / 2e-23 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1) Lus10017112 [exp] 95 / 2e-23 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1) Lus10033424 [exp] 81 / 3e-18 AT3G26060 278 / 1e-95 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10034892 [exp] 79 / 2e-17 AT3G26060 281 / 6e-97 peroxiredoxin Q, Thioredoxin superfamily protein (.1.2) Lus10004221 [exp] 76 / 1e-15 AT5G27720 182 / 2e-57 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF08534 [poplar] [flax] Redoxin Redoxin CL0172 [poplar] [flax] PF10417 [poplar] [flax] 1-cysPrx_C C-terminal domain of 1-Cys peroxiredoxin
Representative CDS sequence Show only first row Show all	>Potri.006G204900.2 pacid=42769263 polypeptide=Potri.006G204900.2.p locus=Potri.006G204900 ID=Potri.006G204900.2.v4.1 annot-version=v4.1 ATGGCCTGCTCGGCAACTTCTACCTCTTTCATCTCCTCTATCGCCGCCGCCAAATCCATGGCCACTCCTCTCTCTAAAACCCTAACTCTCCCCAACTCCT TCTCTGGTACACGGAAATCTATCCAATCTCCCGTCCTCCGTTCCATTTCCCTGACCCGCGGCTCTCATTCTGCAAAGTCCTTCGTTGTCAAAGCCTCTAG TGAACTTCCATTGGTTGGAAACGTAGCACCGGATTTCGAGGCTGAGGCTGTTTTCGATCAAGAGTTTATTAAGGTTAAACTATCTGAATATATCGGGAAC AAATATGTGGTTCTATTTTTCTATCCATTGGACTTCACATTTGTTTGTCCCACAGAAATCACTGCTTTTAGTGACCGTTATGAGGAATTCAAGCAGATAA ACACAGAAGTATTGGGTGTTTCAGTTGACAGTGTGTTCTCGCACCTTGCCTGGGTCCAAACAGATAGAAAGTCTGGTGGGCTTGGAGATTTGAAGTATCC TTTGATTTCTGATGTCACCAAATCCATTTCAAAATCTTATGGAGTGTTAATCCCTGATCAGGGAGTTGCTCTGAGAGGACTTTTTATCATTGATAAAGAA GGAGTCATCCAACACTCCACCATTAACAACCTTGCCATTGGGCGTAGTGTTGACGAGACAAAGAGAACACTCCAGGCCTTGCAGTATGTGCAAGAAAATC CAGATGAAGTTTGCCCAGCTGGGTGGAAGCCTGGTGACAAGTCCATGAAACCTGACCCAAGACAGAGCAAGGATTACTTTGCCGCATTGTAG
AA sequence Show only first row Show all	>Potri.006G204900.2 pacid=42769263 polypeptide=Potri.006G204900.2.p locus=Potri.006G204900 ID=Potri.006G204900.2.v4.1 annot-version=v4.1 MACSATSTSFISSIAAAKSMATPLSKTLTLPNSFSGTRKSIQSPVLRSISLTRGSHSAKSFVVKASSELPLVGNVAPDFEAEAVFDQEFIKVKLSEYIGN KYVVLFFYPLDFTFVCPTEITAFSDRYEEFKQINTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSYGVLIPDQGVALRGLFIIDKE GVIQHSTINNLAIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPRQSKDYFAAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Potri.006G204900 [exp]	0	1	PtrcPrx2cysB,Pt-BAS1.1
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Potri.013G161000 [exp]	10.00	0.9320
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.005G218100 [exp]	17.74	0.8656
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Potri.018G063200 [exp]	18.70	0.9051	Pt-CPN21.2
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Potri.012G145600 [exp]	20.00	0.8845
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Potri.012G093800 [exp]	24.18	0.8998
AT3G25480			Rhodanese/Cell cycle control p...		Potri.002G239800 [exp]	29.89	0.9092
AT1G53520			Chalcone-flavanone isomerase f...		Potri.011G101800 [exp]	32.55	0.8931
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Potri.001G075500 [exp]	48.24	0.9032
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Potri.006G047000 [exp]	59.60	0.8502
AT5G17560			BolA-like family protein (.1)		Potri.013G074100 [exp]	59.89	0.8846

Compare expression of checked genes

Potri.006G204900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.