Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-E2F3.1,E2Fa_1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36010 435 / 1e-149 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT5G22220 365 / 2e-122 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT1G47870 238 / 4e-74 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) AT5G14960 71 / 2e-13 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT3G48160 66 / 1e-11 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2) AT3G01330 64 / 6e-11 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072300 [exp] 684 / 0 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.004G200800 [exp] 457 / 8e-159 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.009G161900 [exp] 433 / 3e-149 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.002G023400 [exp] 244 / 4e-76 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Potri.015G070300 [exp] 67 / 6e-12 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.012G075300 [exp] 66 / 1e-11 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016972 [exp] 502 / 3e-176 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10029421 [exp] 484 / 8e-169 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10004217 [exp] 473 / 5e-165 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 470 / 2e-163 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10005209 [exp] 402 / 2e-138 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10013321 [exp] 328 / 1e-108 AT5G22220 351 / 2e-117 E2F transcription factor 1 (.2.3) Lus10033151 [exp] 239 / 2e-74 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Lus10042941 [exp] 63 / 1e-10 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10032439 [exp] 63 / 2e-10 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10039455 [exp] 55 / 9e-08 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF02319 [poplar] [flax] E2F_TDP E2F/DP family winged-helix DNA-binding domain CL0123 [poplar] [flax] PF16421 [poplar] [flax] E2F_CC-MB E2F transcription factor CC-MB domain
Representative CDS sequence Show only first row Show all	>Potri.006G205100.1 pacid=42769790 polypeptide=Potri.006G205100.1.p locus=Potri.006G205100 ID=Potri.006G205100.1.v4.1 annot-version=v4.1 ATGTCCGGCGGCGCTAAAGCCTCAACCAGACCGGCTGCGGCGCCGCCTCCATCAGGACCGATCCAGCCTCCTTTAACGCGGCAGCTTGCATTTGCTACGA TGAAGCCATCGTTTGTTCCTCCTGATGATTATCACCGATTTTCTTCACCGAGTACTAGTAGAGTCACCGCCGACCGGGATGCCGAGGCTATTGTTGTGAG ATCTCCTCAATTAAAACGGAAGAGTGCATTGGATGATAATGGAGTTGGCCCCAGCAATCGTGCTAGCAGTCCTGGATCCACTAGCATATCTAATATTTCC TTAAGGACACCTGTATCAGCAAAAGGAGGAAGGACATACAACAAATCCAAGGCCTCAAAGGGCAGTGGAGCAGGACCTCAAACCCCGGTGTCAAAGGCTG ATTGTGCTTCTCCTCTTACTCCAGCTGGCAGCTGTCGTTATGATAGTTCCCTTGGTCTTTTGACAAAAAGGTTTGTCGATCTATTTAAACATGCTGATGA TGGAATTCTTGACCTAAACAACGCAGCCGAAACCTTGGAGGTACAAAAGAGACGGATATACGACATAACAAATGTCTTGGAAGGAATTGGTCTCATAGAA AAAACACTCAAGAACAGAATACGTTGGAAGGGTATTGATGCTTCAAGGCCAGGGCAGGTAGAAGGTGATGCAACTTTGTTACAGGCAGAAATTGCAAAGC TTACTATGGAAGAGCACGCACTAGATGATCAAATAAGAGAAATGCAGGAACGATTGAGAGATCTGAGTGAGGATGAGAACAATCAGAAGAGGCTTTTTGT GACTGAAGAAGATATCAAGAGTCTGCCTTGTTTCCTGAATGAAACCCTCATAGCAATTAAAGCTCCCCATGGAACTACTCTAGAAGTCCCTGATCCTGAT GAGGCTGTTGACTATCCACAAAGGAGATACAGGATAATCCTTAGAAGCTCTATGGGTCCTATTGATGTCTACCTTGTGAGTCAATTCGAGGAGAATTTTG AGGAGATGAATAACGTTGAGGCATCTGTGAGCATTCCACTTGCTTCTATTTCAGCATCCCATGGAAACCCAATGACAGAGATGACCACTGATGTGAGAAC CCAGGGAAGAAGTGGATCTCTGGCACAACAGGCACAAACTATGTTCTCTGATCCTAATACTACTCAGGAGTTAGGGGGAATGATGAAGATTGTTCCTTCT GATATACATGATGATTCAGATTACTGGCTTCTTTCAGACGCAGGCATAAGTATTACAGATATGTGGAAGACAGACTCAAATATTGAATGGGCTGATTTTG GGGTGACCGATGTCCAAACTCCCAGGACACAAACTCCATTGCATGGGATTACTGAAGTGCCTCCTGGTGTTTAA
AA sequence Show only first row Show all	>Potri.006G205100.1 pacid=42769790 polypeptide=Potri.006G205100.1.p locus=Potri.006G205100 ID=Potri.006G205100.1.v4.1 annot-version=v4.1 MSGGAKASTRPAAAPPPSGPIQPPLTRQLAFATMKPSFVPPDDYHRFSSPSTSRVTADRDAEAIVVRSPQLKRKSALDDNGVGPSNRASSPGSTSISNIS LRTPVSAKGGRTYNKSKASKGSGAGPQTPVSKADCASPLTPAGSCRYDSSLGLLTKRFVDLFKHADDGILDLNNAAETLEVQKRRIYDITNVLEGIGLIE KTLKNRIRWKGIDASRPGQVEGDATLLQAEIAKLTMEEHALDDQIREMQERLRDLSEDENNQKRLFVTEEDIKSLPCFLNETLIAIKAPHGTTLEVPDPD EAVDYPQRRYRIILRSSMGPIDVYLVSQFEENFEEMNNVEASVSIPLASISASHGNPMTEMTTDVRTQGRSGSLAQQAQTMFSDPNTTQELGGMMKIVPS DIHDDSDYWLLSDAGISITDMWKTDSNIEWADFGVTDVQTPRTQTPLHGITEVPPGV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.006G205100 [exp]	0	1	Pt-E2F3.1,E2Fa_1
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	2.00	0.7869
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G013000 [exp]	8.60	0.7455
AT1G74240			Mitochondrial substrate carrie...		Potri.012G066000 [exp]	10.00	0.7395
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.006G212400 [exp]	13.60	0.7174
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	13.85	0.6868	CHR932
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	15.77	0.7409
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Potri.006G250800 [exp]	19.79	0.6788
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	22.44	0.7052
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	23.32	0.7032	ARF6.4
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.006G191400 [exp]	25.13	0.6001

Compare expression of checked genes

Potri.006G205100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.