Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37340 53 / 2e-07 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 52 / 6e-07 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT3G61860 46 / 4e-05 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G47500 46 / 6e-05 ATRBP47C' RNA-binding protein 47C' (.1) AT2G46610 45 / 6e-05 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47490 46 / 7e-05 ATRBP47C RNA-binding protein 47C (.1.2) AT5G54900 45 / 0.0001 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 44 / 0.0003 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076600 [exp] 50 / 3e-06 AT4G25500 255 / 3e-84 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.018G002300 [exp] 50 / 4e-06 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.015G135800 [exp] 49 / 7e-06 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G153600 [exp] 47 / 1e-05 AT4G25500 264 / 7e-88 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.012G133600 [exp] 48 / 2e-05 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.004G017200 [exp] 46 / 7e-05 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G279600 [exp] 46 / 8e-05 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.014G101800 [exp] 44 / 0.0002 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 43 / 0.0007 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016981 [exp] 245 / 1e-71 AT3G61860 50 / 3e-06 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029414 [exp] 219 / 1e-62 AT2G37340 56 / 2e-08 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Lus10004210 [exp] 218 / 7e-62 AT2G37340 52 / 6e-07 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Lus10038883 [exp] 48 / 1e-05 AT4G25500 206 / 7e-64 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Lus10011924 [exp] 45 / 0.0002 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10030226 [exp] 43 / 0.0005 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041109 [exp] 43 / 0.0006 AT1G17370 378 / 3e-129 oligouridylate binding protein 1B (.1.2) Lus10005891 [exp] 43 / 0.0006 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1) Lus10005986 [exp] 42 / 0.0009 AT3G61860 300 / 3e-103 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031277 [exp] 43 / 0.001 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.006G205800.1 pacid=42770646 polypeptide=Potri.006G205800.1.p locus=Potri.006G205800 ID=Potri.006G205800.1.v4.1 annot-version=v4.1 ATGTCATTGCATATTGGCAACTTATCGTCTCACATTCGTAGAGATGAACTTGAGCGTGTCTTCCAAAGGTTTGGTCGGTGTAATGTACGAATGAAAGATG GATATGGGTTTGTGGTATATGAATTCCCTCCAAATGCAGAAAAAGCTTTGAGAGCACTACATAAGAGGAACATTTGTGGGAAACCACTAACTCTCTCATG GTCAAATAAACAGCCTAGACCACTTAAAAGATTTGCAAGGACTGATAGATCTTATGAGCCACAGCATCGTGGGAATTCTGACAGAGGAGGAGATCATGTT AAAAGAAAATTGGGTTCCAATGATCAGCAAGATTATAGGTTGAGTTTTACTCAAGCAGATAGGAATAGCAGAATACCTAGTTCTGCAGACATGCACCAGG AAGAGATAGTTAACCACCAGGATGACATTGAAGACCACACCAACAAAGAACATCAGGGTTATAGAGAAGATTTTCTAGATGAAAGAGGTAGGGTTGGACC TGACCCAATGGACAATGATAGATGGGGTGAGCAATTCCATAACCCACCAAATGAAGTTGGTGTTGAAAATGGGGTAGAATTTGATAGATATGATCCTTAT GAAGGTTTTGATAGGAGAAACAATGATGAAAATCTTCAGAAGGCCTATTCTGGCGGTACTCTTGCTTTACAAAGCTCTCAAGAGAATGCAGGGGGGGATC ACGCCAGCGATGCAACTTTAAACCGTCTTAGTGATGTAAAATCCCAGGAAACTTGCTACAAATGTGGAGGCTCTGGTCACAAAATGCGCAATTGTCCCCA GGAAAATGCTTCACAGAGAAATGTCACTAGGTTTGACAGTAGGCACACTGATGACATCCATAGAAGTGGTAGAGGTAAAGGCGATCCAGAAAAAAATGGA TCCAGGTCATGGGAAAAGCTCCAGTCAAGTAGAGATGCTATACCAGGAAGGAGACTCAAGAATGATAAAGAATCATCTGGTTCAGGAAGGCATGAAGAAG TGACAAGGAATGGAAGATCTGCTGTATCAAAGGAAACCGATTGGTCCTGTAAAAAGGAGTATGAAAGGAAAAGACAACGTAGGAAGGAAATTGAATCTCC AAAAAGACATGGCACAAAGAAAGGGAGACGATCAACTTCATCTTTTCTGCATTCTGACAACACCACATCTAGATTGCATTCTACATCTCATTCCTCTAAG CAGCTGCAAAGGTCTCACTCCCACTCTAGATCAAAATCACTATCTTCCAGCTTAAGGTCTGGCTCAACATCACTCTATTCTAGATCCCAAAGTTCTAAAA CCATGTCAAGATCAATATCTCCTACATCCCTATCCTTGTCCGTGTCACTTGGTCAAGCTTTGCCGTCCTCTTCAAATAAGGCACAGCTGATCATGAAAGG CTCATCAGATAATGCCACAACACCTGAATCCAAGGAGGTTTTTATTGAAGAAGTGCAACCAGTAGAAGGTGAAACTGGCTTGCAGGGTGATAAACATGGA TTGAAGACGGTTGCTGTGAATGACAATGCAGTGTCATCGTCCAAAGCAGACACTGAAATGGAAAAATATCAGCCTCTTCAGAAGGATAGTGATGACTGCC TAATGGTGTCCAATTCATTGCACAAAGCAACTAATTCAAGCACACAAATACTGTCAGAGGAAGGCACACTTGCTGCTGGAAATCTCTCTCTGGAGCCTGT GTTAGAGATGGAATGTCAAAATTCTGATACATTTGAAACTGAGCATGTGCAAGTTCCATTGAAGAAATTGGACCCACAAGCTCCTGCCAGCTCATCTTCC TTCCACTCAACAAGCATTTCTGCAGGGGAGTTGAGCAGTGTTCTGAAGCACTATGGCCTTGGTTGTCAAGATGAGAATGAAAAGCCTTTGCCTGCTGAGG CTTACTTTGGTTCTGCTCGCTTGTGGCCGTGGGAGATCATCCACTACAGGAGGTTGAAGAAGGGCCTTATCTCCATTGAGAACTATGCTAGGCGGGTTGA TCAGAATAGGGAATTCGGTATTGTTGACAAATATATTAGAAGCAGTAGTGGTTGGGGAGAATTACATCAAGAGAACCTGTGA
AA sequence Show only first row Show all	>Potri.006G205800.1 pacid=42770646 polypeptide=Potri.006G205800.1.p locus=Potri.006G205800 ID=Potri.006G205800.1.v4.1 annot-version=v4.1 MSLHIGNLSSHIRRDELERVFQRFGRCNVRMKDGYGFVVYEFPPNAEKALRALHKRNICGKPLTLSWSNKQPRPLKRFARTDRSYEPQHRGNSDRGGDHV KRKLGSNDQQDYRLSFTQADRNSRIPSSADMHQEEIVNHQDDIEDHTNKEHQGYREDFLDERGRVGPDPMDNDRWGEQFHNPPNEVGVENGVEFDRYDPY EGFDRRNNDENLQKAYSGGTLALQSSQENAGGDHASDATLNRLSDVKSQETCYKCGGSGHKMRNCPQENASQRNVTRFDSRHTDDIHRSGRGKGDPEKNG SRSWEKLQSSRDAIPGRRLKNDKESSGSGRHEEVTRNGRSAVSKETDWSCKKEYERKRQRRKEIESPKRHGTKKGRRSTSSFLHSDNTTSRLHSTSHSSK QLQRSHSHSRSKSLSSSLRSGSTSLYSRSQSSKTMSRSISPTSLSLSVSLGQALPSSSNKAQLIMKGSSDNATTPESKEVFIEEVQPVEGETGLQGDKHG LKTVAVNDNAVSSSKADTEMEKYQPLQKDSDDCLMVSNSLHKATNSSTQILSEEGTLAAGNLSLEPVLEMECQNSDTFETEHVQVPLKKLDPQAPASSSS FHSTSISAGELSSVLKHYGLGCQDENEKPLPAEAYFGSARLWPWEIIHYRRLKKGLISIENYARRVDQNREFGIVDKYIRSSSGWGELHQENL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	0	1
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	1.00	0.8620
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Potri.013G081400 [exp]	4.00	0.8307
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	4.47	0.8513
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	5.47	0.8386
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	6.92	0.8431
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	10.67	0.8070
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	12.24	0.8442
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	14.49	0.8345
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.018G109201 [exp]	15.49	0.7993
AT5G05800			unknown protein		Potri.010G076000 [exp]	16.30	0.7825

Compare expression of checked genes

Potri.006G205800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.