Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06260 604 / 0 TLD-domain containing nucleolar protein (.1) AT4G34070 340 / 2e-115 Calcium-binding EF-hand family protein (.1) AT2G45380 126 / 1e-31 unknown protein AT2G05590 68 / 2e-12 TLD-domain containing nucleolar protein (.1.2) AT2G44850 66 / 1e-11 unknown protein AT4G39870 65 / 2e-11 TLD-domain containing nucleolar protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075800 [exp] 81 / 2e-16 AT4G39870 405 / 1e-140 TLD-domain containing nucleolar protein (.1.2) Potri.007G092700 [exp] 76 / 6e-15 AT4G39870 414 / 3e-144 TLD-domain containing nucleolar protein (.1.2) Potri.010G065900 [exp] 70 / 7e-13 AT2G05590 286 / 6e-96 TLD-domain containing nucleolar protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021306 [exp] 664 / 0 AT5G06260 574 / 0.0 TLD-domain containing nucleolar protein (.1) Lus10016984 [exp] 518 / 0 AT5G06260 460 / 5e-161 TLD-domain containing nucleolar protein (.1) Lus10014476 [exp] 72 / 2e-13 AT2G05590 307 / 4e-104 TLD-domain containing nucleolar protein (.1.2) Lus10041697 [exp] 72 / 2e-13 AT4G39870 419 / 4e-146 TLD-domain containing nucleolar protein (.1.2) Lus10024053 [exp] 72 / 5e-13 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10023727 [exp] 64 / 8e-11 AT1G04500 315 / 3e-100 CCT motif family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07534 [poplar] [flax] TLD TLD
Representative CDS sequence Show only first row Show all	>Potri.006G206200.1 pacid=42769925 polypeptide=Potri.006G206200.1.p locus=Potri.006G206200 ID=Potri.006G206200.1.v4.1 annot-version=v4.1 ATGGGCAATTCTCAGTCACCTCCTGCTGATCCTCGTTTCTCTTCTGCCACCAGAGCTTTTACTCAAAAGGACCTTGAAGACCTCAATTCACTCTTTGTAT CTCTGGCTGCCCAATCGAAGAGCAACAATGAATATATATCCCTCTCTGTTTTTCAGGCTTATTTTGGATTAAAGAGTTCTCTCGGAGAGAGATTGTTTGA TTTAGTGACCCAACAGAGAAAAGATAACAAACTCACCTTCCACGATCTTGTTATTGCTAAAAGTGTTTATGAGAAAGGAACAAGAGATGATATTGAAGAG TTTATTTATCAATTACTTAATGTAACAGGTGATGGTGTTGTGGGGAGGTGTGATATTGAATCTGTCCTAGCTGCAATTTTGAGGAGTATTTTTTCCCTGG AAGCTTCTAACCCTGGATTGAATTCACATCGGGAGATTATTAATGTATTTCTTAGTTCTGCAAAATTTTCGAAGGTTGTTGAAGGAGCAGCTGAGAAAAG TATGTCTTTTGAGGATTTCAGAAGTTGGTGTGCTCTTCTTCCATCAGTCAGGAAGTTCCTTGGAAGTTTGTTAATACCACCCGATGCAGGAAGGCTAGGT TCTCAAGTTCCTCAATTGGTGCACGGGGATAATATCAATCCTGACTTGATATTATTGAGGGAGGAATATGCCTGGCATATAGGAGGAGCCCTTCCACACC ATGAGCTGGTGGAGTGGAAACTTTTGTACCATAGTGCTATTAATGGCATGAGCTTCAATACGTTCTTGGGAAGCACCTCAAATGGTGAAGGGCCGACAAT ATTGATTATTAAGGATAAAGATGGCTACATATATGGAGGCTATGCTTCTCAACCTTGGGAGAGGCATGGCGATTTCTATGGAGATCTGAAGTCATTTCTG TTTCAGCTTTACCCGAAGGCATCAATTTTCAAGCCCACCGGAGCAAACAATAATGTACAATGGTGTGCTGCGAATTTTAGCTCAGAGTCCATCCCAAATG GCATTGGTTTTGGTGGACGTGTTAATCACTTTGGCTTGTTCCTCTCAGCAAGCTTTGATGTGGGTCAGACCTTCACTTGCACCACTTTTGGAAGTCCTTG CCTCTCCAAGACCAATCGCATATTCCCAGAAGTGATAGAATGCTGGGGAATTGTTCAAAATGGAGCACAACAAGAAAAACTTGATGCCGCCAAAGGTACA GTTTTAGAGAGATTTAAGGAGGACCGACACATGCTCAACATGGTGGGGCTTGCAAATTCAAGCGAGTAA
AA sequence Show only first row Show all	>Potri.006G206200.1 pacid=42769925 polypeptide=Potri.006G206200.1.p locus=Potri.006G206200 ID=Potri.006G206200.1.v4.1 annot-version=v4.1 MGNSQSPPADPRFSSATRAFTQKDLEDLNSLFVSLAAQSKSNNEYISLSVFQAYFGLKSSLGERLFDLVTQQRKDNKLTFHDLVIAKSVYEKGTRDDIEE FIYQLLNVTGDGVVGRCDIESVLAAILRSIFSLEASNPGLNSHREIINVFLSSAKFSKVVEGAAEKSMSFEDFRSWCALLPSVRKFLGSLLIPPDAGRLG SQVPQLVHGDNINPDLILLREEYAWHIGGALPHHELVEWKLLYHSAINGMSFNTFLGSTSNGEGPTILIIKDKDGYIYGGYASQPWERHGDFYGDLKSFL FQLYPKASIFKPTGANNNVQWCAANFSSESIPNGIGFGGRVNHFGLFLSASFDVGQTFTCTTFGSPCLSKTNRIFPEVIECWGIVQNGAQQEKLDAAKGT VLERFKEDRHMLNMVGLANSSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06260			TLD-domain containing nucleola...		Potri.006G206200 [exp]	0	1
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073100 [exp]	3.00	0.6517
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	15.55	0.5866
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.001G060800 [exp]	17.32	0.6011
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.019G131400 [exp]	20.49	0.5791	UBC.10
AT3G49645			unknown protein		Potri.017G091300 [exp]	24.00	0.5859
AT1G02610			RING/FYVE/PHD zinc finger supe...		Potri.014G121900 [exp]	29.58	0.5568
AT4G16695			unknown protein		Potri.003G078100 [exp]	40.47	0.5498
AT1G22790			unknown protein		Potri.005G196300 [exp]	47.28	0.5627
AT3G09735			S1FA-like DNA-binding protein ...		Potri.016G087400 [exp]	54.02	0.5665	Pt-S1FA3.2
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	65.38	0.5437

Compare expression of checked genes

Potri.006G206200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.