Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 245 / 1e-80 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 233 / 2e-76 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 232 / 1e-75 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 229 / 7e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 223 / 3e-72 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 223 / 6e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 217 / 3e-70 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47120 217 / 4e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 210 / 2e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 202 / 1e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 473 / 1e-170 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 373 / 3e-131 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 368 / 3e-129 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 359 / 9e-126 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 345 / 2e-120 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 327 / 2e-113 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 319 / 3e-110 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 310 / 1e-106 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 307 / 2e-105 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021318 [exp] 379 / 2e-133 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 378 / 3e-133 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 371 / 2e-130 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 368 / 4e-129 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 367 / 5e-129 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 365 / 5e-128 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 358 / 2e-125 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 315 / 2e-108 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 312 / 2e-107 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021319 [exp] 310 / 3e-106 AT1G52340 229 / 1e-74 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.006G206400.1 pacid=42769941 polypeptide=Potri.006G206400.1.p locus=Potri.006G206400 ID=Potri.006G206400.1.v4.1 annot-version=v4.1 ATGAGTTCCATAACTTCAGCAACTCCAATCACCAAGAGGCTTGAAGGCAAGGTGGCATTGATAACAGGTGGTGCAAGTGGCATAGGAGCTTGCACGGCAA GACTTTTTGTCCAACATGGAGCTAAAGTCCTCATTGCTGACATCCAAGATGATCTTGGGCACTCCTTCTGCCAAGCATTTGGGCCCCAAGAAACCATCTC TTATGTCCATTGCAATGTAACCTGTGACTCTGATGTTCAAAACGCAGTGGATACAGCTGTTTCCAAGTATGGAAAGCTCGACATCATGTTCAACAATGCT GGAATTCCAGGTGACAGAAAATCAGGTATTCTAACATGCGATAACGAAAACTTTAAGAGGGTCCTTGATGTCAATGTCTATGGTGGATTCTTGGGTGCCA AACACGCTGCCAGGGTAATGATCCCAGCAAAGAAAGGGTGTATCCTCTTCACTTCAAGTGTGGCTTCAGTATTGTATGGTGAATTGGCACATGCATACAC CGCATCTAAGAATGCTATTGTAGGCTTGGCCAAGAACTTGAGTGTGGAGTTGGGGCAATATGGGATTAGAGTAAATAGCATTTCACCCTATGCAGTTGCA ACCCCTTTGCTTACTGATGGTTTGAGTATGACAAAGGAGGCTGCTGAGGAATTGGTCGCGTCAGCAGCAACCTTAAAAGATGTGGTACTGGAACCAGAAG ATGTTTCACAGGCAGCCTTATATCTTGCTAGTGAAGAGTCCAAGTATGTTAGTGGGGTTAACTTGGTCATTGATGGAGGTTATAACCTTACCAACCCCTC ATTTTCAATGGCATTGAAAGCCAACTTTTCTAAATTTTAA
AA sequence Show only first row Show all	>Potri.006G206400.1 pacid=42769941 polypeptide=Potri.006G206400.1.p locus=Potri.006G206400 ID=Potri.006G206400.1.v4.1 annot-version=v4.1 MSSITSATPITKRLEGKVALITGGASGIGACTARLFVQHGAKVLIADIQDDLGHSFCQAFGPQETISYVHCNVTCDSDVQNAVDTAVSKYGKLDIMFNNA GIPGDRKSGILTCDNENFKRVLDVNVYGGFLGAKHAARVMIPAKKGCILFTSSVASVLYGELAHAYTASKNAIVGLAKNLSVELGQYGIRVNSISPYAVA TPLLTDGLSMTKEAAEELVASAATLKDVVLEPEDVSQAALYLASEESKYVSGVNLVIDGGYNLTNPSFSMALKANFSKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.006G206400 [exp]	0	1
					Potri.002G022100 [exp]	1.00	0.9574
					Potri.002G250900 [exp]	2.44	0.9429
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G151000 [exp]	3.16	0.9292
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.017G078300 [exp]	5.29	0.9069	PIN14
AT3G10600		CAT7	cationic amino acid transporte...		Potri.010G241000 [exp]	8.66	0.9149	PtrCAT10,Pt-CAT6.3
					Potri.004G226200 [exp]	10.00	0.9137
AT3G48660			Protein of unknown function (D...		Potri.003G170400 [exp]	10.58	0.9340
					Potri.008G114101 [exp]	10.58	0.9186
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Potri.002G100600 [exp]	13.11	0.8813
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G076700 [exp]	13.41	0.9059

Compare expression of checked genes

Potri.006G206400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.