Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 230 / 3e-75 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 217 / 2e-69 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 213 / 2e-68 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 210 / 2e-67 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 201 / 5e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 197 / 2e-62 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 191 / 9e-60 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 190 / 5e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 185 / 9e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 179 / 7e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199900 [exp] 261 / 4e-87 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 255 / 5e-85 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 251 / 2e-83 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 249 / 2e-82 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 249 / 2e-82 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 248 / 3e-82 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 248 / 5e-82 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 246 / 2e-81 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 240 / 3e-79 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022760 [exp] 295 / 9e-101 AT2G47140 219 / 4e-71 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 259 / 1e-86 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 256 / 5e-85 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 255 / 8e-85 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 255 / 1e-84 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 254 / 1e-84 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 253 / 6e-84 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 250 / 5e-83 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 249 / 2e-82 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 248 / 5e-82 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.006G206900.1 pacid=42768191 polypeptide=Potri.006G206900.1.p locus=Potri.006G206900 ID=Potri.006G206900.1.v4.1 annot-version=v4.1 ATGACAGGTACCAGTTCGGTTGCATCACAGAAAAGGTTAGCAGGCAAGGTGTCAATCATAACCGGTGGCGCAAGCGGCATAGGAGCAAGTGCAGTGCAAC TTTTCCATGAAAATGGTGCTAAGGTCGTTCTTGCCGATATCCAAGACACCCTAGGCCAAGCCCTAGCTCAAAAACTTGGTGAAGATGTTTGCTACATCCA CTGTGATGTTTCAAACGAAGATGAAGTTAGCAATCTTGTTGACGCCACCGTTAAAAAATATGGTAAGCTTGATATAATGTATAACAATGCAGGCATCCTG GGTCGTCCTTTAGGAAGCATTTTGGACGCCCCGAAATCAGATCTAGACCGCCTAATTAGTGTAAACCTGGTAGGTTGTTTCCTTGGAGCCAAACATGCAG CTAGGATCATGGTAACCCAAGGTCAGGGTTGCATTTTATTCACTGCCAGTGCTTGTACAGCTATTGGTGGACTAGCAACTCCCGCTTATGCAGTGACCAA ACATGGTATCGTGGGGTTAGCGAAAAACTTAGCGGCTGAGTTAGGGCAGTATGGTATAAGAGTAAATTGTGTTTCGCCTTATGGAGTAGCAACTCCCATG TATGAGGGATTTTCAGCAGATACTGCGCCAATGATAGAAGAATCACTGGGACAAATGGGTAATCTAAAGGGGAAAATTCCCAAGGTGGAAGACATGGCAA AGGCTGCACTATACTTGGCTAGTGATGAAGCAAATTATGTGAGTGGGATGAATCTTGTCGTGGATGGTGGGTTCAGTGTTGTTAATCCTACAATGATGAA AGCTTTGTACCCCGCTAAATTATAA
AA sequence Show only first row Show all	>Potri.006G206900.1 pacid=42768191 polypeptide=Potri.006G206900.1.p locus=Potri.006G206900 ID=Potri.006G206900.1.v4.1 annot-version=v4.1 MTGTSSVASQKRLAGKVSIITGGASGIGASAVQLFHENGAKVVLADIQDTLGQALAQKLGEDVCYIHCDVSNEDEVSNLVDATVKKYGKLDIMYNNAGIL GRPLGSILDAPKSDLDRLISVNLVGCFLGAKHAARIMVTQGQGCILFTASACTAIGGLATPAYAVTKHGIVGLAKNLAAELGQYGIRVNCVSPYGVATPM YEGFSADTAPMIEESLGQMGNLKGKIPKVEDMAKAALYLASDEANYVSGMNLVVDGGFSVVNPTMMKALYPAKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.006G206900 [exp]	0	1
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067567 [exp]	8.71	0.8650
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.012G062200 [exp]	12.48	0.9003
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.002G188900 [exp]	13.07	0.9210
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G069799 [exp]	13.78	0.9224
AT1G34580			Major facilitator superfamily ...		Potri.002G095900 [exp]	19.07	0.8916	HT1.1
					Potri.012G045950 [exp]	24.37	0.9052
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.014G130500 [exp]	25.88	0.9129
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.003G119100 [exp]	26.72	0.8999	Pt-ANS.2
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Potri.002G184700 [exp]	28.61	0.9083
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.010G153700 [exp]	28.84	0.8874

Compare expression of checked genes

Potri.006G206900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.