Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03140 240 / 3e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 233 / 4e-76 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 229 / 2e-74 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 227 / 2e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 221 / 4e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 216 / 5e-70 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 211 / 6e-68 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 211 / 7e-68 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47120 211 / 7e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 203 / 7e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074000 [exp] 445 / 7e-160 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 317 / 3e-109 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 315 / 2e-108 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 293 / 1e-99 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 291 / 3e-99 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 285 / 2e-96 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 284 / 3e-96 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 283 / 1e-95 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 282 / 2e-95 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021320 [exp] 405 / 7e-144 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 397 / 8e-141 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 280 / 2e-94 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 278 / 8e-94 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 278 / 9e-94 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 277 / 1e-93 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 277 / 2e-93 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 276 / 5e-93 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 276 / 6e-93 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 274 / 2e-92 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.006G207100.1 pacid=42770359 polypeptide=Potri.006G207100.1.p locus=Potri.006G207100 ID=Potri.006G207100.1.v4.1 annot-version=v4.1 ATGACAACAACAGGATTTATCTCTTCAGTTGCTAGAAGGCTGGAAGGAAAAGTAGCCTTAATCACTGGAGGAGCCAGCGGCATTGGAGAATGCACAGCTA AAGTGTTTGCCCACCACGGTGCCAAAGTGGTCGTTGCTGACATCCAAGATGAATCGGGTCGTTCACTTGCTAAAGCCCTAGGTCCATCAAACTCTACCTA TGTGCACTGTGACGTAACTGATGAGGCCCAAGTAAAAAATGCAGTGAACGCCGCTGTCACAACTTATGGCAAGCTAGACATAATGTTCAACAATGCCGGC ATTGCTGATGAGAGCAAAGCACGCATAATTGACAATGAAAAGGTTGATTTTGAACGTGTTCTGCAGACTAATGTGACGGGAGTTTTTCTTGGCATCAAAC ATGCAGCCCGTGTCATGATCCCGGGACGCAATGGTACCATAATTTCAACTGCCAGTGTTAGCTCAAAAGTTGGTGCTGCTGCCTCACATGCATATTGTTG CTCCAAGCATGCTGTTCTAGGACTCACCAAAAATGCTGCTGTTGAGCTTGGGCAATTTGGCATCAGAGTGAACTGTTTATCACCTTATGCGCTTGCAACC CCTTTAGCAAAACAAGTTATTGGTCTTGATGATGAACAACTTGAGAATTTGATGCACGCTTTTGGTACCCTAAAGGGTGTGACCCTTCAGGCAGAAGATG TAGCCAACGCAGCACTTTATCTGGCAAGTGATGAAGCTAGATATGTCAGTGGGCACAATTTATTCATAGATGGGGGTTTTACCATTCAGAACCCATCATT CCGCATGTTCCAGTATCCTGAATAG
AA sequence Show only first row Show all	>Potri.006G207100.1 pacid=42770359 polypeptide=Potri.006G207100.1.p locus=Potri.006G207100 ID=Potri.006G207100.1.v4.1 annot-version=v4.1 MTTTGFISSVARRLEGKVALITGGASGIGECTAKVFAHHGAKVVVADIQDESGRSLAKALGPSNSTYVHCDVTDEAQVKNAVNAAVTTYGKLDIMFNNAG IADESKARIIDNEKVDFERVLQTNVTGVFLGIKHAARVMIPGRNGTIISTASVSSKVGAAASHAYCCSKHAVLGLTKNAAVELGQFGIRVNCLSPYALAT PLAKQVIGLDDEQLENLMHAFGTLKGVTLQAEDVANAALYLASDEARYVSGHNLFIDGGFTIQNPSFRMFQYPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03140			NAD(P)-binding Rossmann-fold s...		Potri.006G207100 [exp]	0	1
					Potri.002G091600 [exp]	6.92	0.8671
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Potri.018G080100 [exp]	9.05	0.8716
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G442200 [exp]	10.81	0.8275
AT1G24440			RING/U-box superfamily protein...		Potri.015G089800 [exp]	17.66	0.8485
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.009G063300 [exp]	19.36	0.8496	CAD.2
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.011G071100 [exp]	24.16	0.8386
AT1G14550			Peroxidase superfamily protein...		Potri.010G236910 [exp]	26.83	0.8202
AT5G36160			Tyrosine transaminase family p...		Potri.007G138052 [exp]	28.40	0.8711
AT2G42360			RING/U-box superfamily protein...		Potri.019G091400 [exp]	35.29	0.8444
AT5G41761			unknown protein		Potri.006G017700 [exp]	43.47	0.8297

Compare expression of checked genes

Potri.006G207100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.