Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ILL1,Pt-ILR1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02875 585 / 0 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G56660 417 / 2e-143 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51760 413 / 6e-142 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G54140 404 / 1e-138 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT5G56650 404 / 1e-138 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT1G51780 401 / 3e-137 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT1G44350 397 / 2e-135 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207300 [exp] 821 / 0 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.016G074100 [exp] 573 / 0 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 449 / 2e-155 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.010G035900 [exp] 443 / 2e-153 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 442 / 1e-152 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.012G007400 [exp] 438 / 7e-152 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.015G004000 [exp] 430 / 1e-148 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.003G045200 [exp] 428 / 8e-148 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021321 [exp] 679 / 0 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10016998 [exp] 675 / 0 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10022761 [exp] 509 / 8e-180 AT3G02875 489 / 3e-172 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 468 / 1e-163 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 463 / 2e-161 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 442 / 3e-153 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10032963 [exp] 435 / 1e-150 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10029200 [exp] 432 / 3e-149 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10037601 [exp] 431 / 8e-149 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10025668 [exp] 417 / 3e-143 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF01546 [poplar] [flax] Peptidase_M20 Peptidase family M20/M25/M40 CL0035 [poplar] [flax] PF07687 [poplar] [flax] M20_dimer Peptidase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.006G207400.1 pacid=42768559 polypeptide=Potri.006G207400.1.p locus=Potri.006G207400 ID=Potri.006G207400.1.v4.1 annot-version=v4.1 ATGAGGTTAATCACCTGGTTCTTGCTCTCAGTACTCTTCCTTTACCAACAATCTTTGGCTTTCCAGGCTGGTCAGGAACTGGGCCTTCAGTTTCTGACTC GTGAGCTGTTGGCAGCAGCAAGAGAACCAGACTTCTTTGAATGGGTGAGAGGAATCAGAAGGAGAATTCACGAGTATCCAGAGCTAGGATTTGAAGAGTA CAGAACAAGTGAGATCATCAGGTCTGAGCTTGACTTGCTTGGAATCGACTACAAATGGCCCGTTGCCAAGACTGGGGTGGTAGCTACCGTCGGTTCCGGC CAAGAGCCAGTATTTGCTCTCAGAGCTGACATGGATGCCCTGCCTCTACAGGAAGAAGTAGAGTGGGAGCACAAGAGCAAGATTGATGGCAAGATGCATG CCTGCGGTCATGATTCTCATGTAGCAATGCTGCTTGGAGCAGCCAAGTTACTTCAAGCCAAAAGAGAAACACTGAAGGGAACCGTGAAGCTTGTTTTCCA GCCAGGAGAAGAAGGCTATGCCGGTGCGTACCATATGTTACAAGATGGTTGTCTTGATGACGTTGAAGCCATCTTAAGCATACATGTTATCCCATCAGTA CCAACTGGTGCCATTGCTTCAAGACCCGGCCCATTGCTTGCTGGTGTGGGGCTTTTTGAAGCTAAAATCCAAGGAATAGGTGCCCACGCTTCATCTCCAC ATTTGGCTAGGGACCCAATTCTTATGGCATCATCTGCAGTCGTTGCTCTCCAACAGATCGTATCTCGTGAGACAGATCCTCTTGAAGCTGCGGTGGTGAC AGTTGGGTACATAGAGGGGGGGAAAGCTGGAAACGTTATTCCGGAAACGGCGAAATTTGGAGGAACTTTTAGGAGTTTGAGCAACGAAGGTGTGTCCTAC CTACAAAAAAGAATTCAAGAGATCATAGAGGCCCATGCAGCAGTGCATCGATGCAATGCTACAGTGAACTTTATGGAGGACAGACATCTGCCACATCCTG TGATGATTAATGATGAACAACTGTATAAGCATGCAAAGAGGGTTGGAGAGGCCTTACTCGGAGAACCAAATGTGCAGCTATTCCCAGTAACAATGGGAGC AGAGGATTTCAGCTTCTTCTCCCAAAGGATGCCTGCTGCAATATTTGTTATTGGGACAATGAATGAGACGCTGAAATCACATCAGCCGCTTCACTCACCT TACTTCTTTATTGATGAGGAGGCTCTTCCGATAGGCACAGCTCTTAATGCTGCCGTTGCAATCTCCTACTTGGATACGCAAATTGTGAAGAATTGTGAGG AACCTCCCTCAGCTTTTGCTTTTTGA
AA sequence Show only first row Show all	>Potri.006G207400.1 pacid=42768559 polypeptide=Potri.006G207400.1.p locus=Potri.006G207400 ID=Potri.006G207400.1.v4.1 annot-version=v4.1 MRLITWFLLSVLFLYQQSLAFQAGQELGLQFLTRELLAAAREPDFFEWVRGIRRRIHEYPELGFEEYRTSEIIRSELDLLGIDYKWPVAKTGVVATVGSG QEPVFALRADMDALPLQEEVEWEHKSKIDGKMHACGHDSHVAMLLGAAKLLQAKRETLKGTVKLVFQPGEEGYAGAYHMLQDGCLDDVEAILSIHVIPSV PTGAIASRPGPLLAGVGLFEAKIQGIGAHASSPHLARDPILMASSAVVALQQIVSRETDPLEAAVVTVGYIEGGKAGNVIPETAKFGGTFRSLSNEGVSY LQKRIQEIIEAHAAVHRCNATVNFMEDRHLPHPVMINDEQLYKHAKRVGEALLGEPNVQLFPVTMGAEDFSFFSQRMPAAIFVIGTMNETLKSHQPLHSP YFFIDEEALPIGTALNAAVAISYLDTQIVKNCEEPPSAFAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207400 [exp]	0	1	ILL1,Pt-ILR1.2
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	6.00	0.7235
AT4G38520			Protein phosphatase 2C family ...		Potri.004G177100 [exp]	6.24	0.7014
AT3G16990			Haem oxygenase-like, multi-hel...		Potri.008G106600 [exp]	9.00	0.6772	Pt-PM36.1
AT5G53880			unknown protein		Potri.011G117001 [exp]	9.94	0.7318
					Potri.015G131300 [exp]	10.48	0.6910
AT1G02816			Protein of unknown function, D...		Potri.014G127600 [exp]	12.48	0.6124
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019200 [exp]	14.00	0.6924
AT1G01380	MYB	ETC1	ENHANCER OF TRY AND CPC 1, Hom...		Potri.004G021300 [exp]	16.30	0.6849
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Potri.014G053600 [exp]	17.32	0.6537	ATL4.2
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.002G118900 [exp]	19.05	0.6750

Compare expression of checked genes

Potri.006G207400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.