Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37570 602 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G29230 414 / 2e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 390 / 2e-127 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 384 / 1e-125 SLO1 SLOW GROWTH 1 (.1) AT2G44880 360 / 7e-118 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G08070 363 / 4e-117 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 362 / 5e-117 MEF22 mitochondrial editing factor 22 (.1) AT3G08820 359 / 5e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 346 / 7e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G21470 338 / 7e-110 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 412 / 6e-136 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 400 / 7e-133 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 395 / 5e-132 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G116100 [exp] 387 / 2e-128 AT4G22760 669 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 386 / 1e-126 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 380 / 4e-124 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 378 / 1e-123 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G046200 [exp] 373 / 1e-122 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G103600 [exp] 374 / 2e-122 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014212 [exp] 697 / 0 AT5G37570 561 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10022701 [exp] 694 / 0 AT5G37570 556 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 388 / 4e-127 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 387 / 3e-126 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 382 / 4e-124 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 376 / 2e-123 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 379 / 3e-123 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 375 / 6e-123 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028907 [exp] 374 / 1e-122 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 372 / 6e-122 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G207500.1 pacid=42767983 polypeptide=Potri.006G207500.1.p locus=Potri.006G207500 ID=Potri.006G207500.1.v4.1 annot-version=v4.1 ATGCACCAATTCATGCAAGGAAACCCCCTCTCTCTTACAAGCCCATCCATGCCTTTAAATCTTTCCTCCTCTAACCCTTCAATCTCACTTCTCATTAAAT CCTGCAAAACAATCCCTCACCTTCATCAATTCCACGCCCACATAATCCACAAAGGTCTTGAACAAGACCACTTTATAATCTCCCACTTTCTCTCCATCTC TACTTCAGTTTCCTACTCCACTTCTATCTTTAATCGCCTCCTTAACCCCTCCACTTTCCTCTATAACATCCTCCTCAAAATCTTCTCTAAAAATTCCCAA TTCATTGACACGTTTTCGCTCTTTTATCGAATGAAACAAAGCGAGTATGCATTGTCTGATAAATACACTTATCCGCTGCTAATTAAGGTTTGTTCTAATG AATTGAGACTGAAAGAAGGTGAAATTGTTCATGGGTCGGCAATACGGTGTGGAGTTAGTGATGATGTTTATGTTGGGTCTAGTTTGATTAGTTTTTATGG TAAATGCAAGGAGATATTGAGTGCACGTAAGGTGTTTGATGAAATTCCTGAGAGAAATGTGGTTTCTTGGACAGCAATGGTTGCTGGATATGCAAGTGTT GGGGATTTGGAAAACGCTAAGAGGGTGTTTGAGAGAATGCCGGAGAGGAATTTACCGTCGTGGAATGCAATGATCAGTGGCCTGGGGAAAGCAGGGGATT TGAGTGGAGCGAAGAAGGTGTTTGATGAAATGGTCGAGAGAAATGTTGTCTCATTTACAGTTATGATTGATGGATATGCGAAAGTAGGGGATATGGCGTC TGCAAGGGCATTGTTTGATGAAGCTCCAGAAAAAGATGTTGTTGCATGGTCCGCATTGATTTCTGGGTATTCTCGGAATGAACAGCCTAATGAGGCCGTC AAGATATTTTTTGAAATGGTGTCTATGAATGTTAAGCCCGATGAATTTATAATGGTGAGTTTGATGTCTGCTTGTTCCCAACTGGGTAATTCAGACTTGG CTAAATGGGTTGATAGTTATTTGAGCCAGACATCAATTGATACTCGTCAGGCTCATGTTCTTGCTGCCCTTATTGACATGCATGCGAAGTGTGGGAACAT GGAAAAGGCGGTAAAATTGTTTGAAGATATGCCTAGTCGTGACCTAATTCCATGTTGTTCTTTGATACAAGGATTGTCTATTCATGGACGAGGAGTTGAG GCTGTTGAGTTGTTTAACAGGATGTTAGATGAGGGGTTAATTCCAGATACAGTGGCATTTACTGTAATTTTGACAGCTTGTAGCCGTGGAGGGCTTATTG AGGATGGCTGGCACTTTTTTGATACCATGAAAAACAAGTACTCTGTAGTTCCCTCTCCTAATCATTATGCCTGTATGGTTGATCTACTTAGCCGAGCAGG ACAGCTAAGGGCAGCTTACGATCTTCTGAAGTCAATGCCTTTGAAGCCTCATGCTTGTGCTTGGGGTGCACTGCTTGGGGCTTGTAAATTGCATGGTGAT GTTGAGTTGAGAGAGGAGGTTGCTAATCGGCTGTTAGAACTTGAACCTGAAAAGGCTGGTAGTTATGTGCTCTTATCTAACATCTATGCCTCAGCAAATC AATGGTTAGATGTTTCTATTGTTAGGGATGAAATGAAGGAGAGAGGGATTAGAAAAATACCTGGTTGCAGTTATATATTTACAGAGGCCTGA
AA sequence Show only first row Show all	>Potri.006G207500.1 pacid=42767983 polypeptide=Potri.006G207500.1.p locus=Potri.006G207500 ID=Potri.006G207500.1.v4.1 annot-version=v4.1 MHQFMQGNPLSLTSPSMPLNLSSSNPSISLLIKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFLSISTSVSYSTSIFNRLLNPSTFLYNILLKIFSKNSQ FIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASV GDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGAKKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAV KIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFEDMPSRDLIPCCSLIQGLSIHGRGVE AVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGD VELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCSYIFTEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	0	1
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	1.00	0.9755
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	2.00	0.9644
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	2.44	0.9659
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	2.44	0.9645
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.003G031600 [exp]	2.82	0.9587
AT4G20010		PTAC9, OSB2	ORGANELLAR SINGLE-STRANDED DNA...		Potri.001G394200 [exp]	3.31	0.9534
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	3.74	0.9602
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	3.74	0.9514
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	3.87	0.9621
AT3G15000			cobalt ion binding (.1)		Potri.011G112200 [exp]	4.24	0.9564

Compare expression of checked genes

Potri.006G207500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.