Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22300 368 / 4e-126 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44320 333 / 2e-112 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44300 331 / 1e-111 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44310 321 / 1e-107 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT2G27450 66 / 7e-12 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G12040 63 / 9e-11 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT5G64370 61 / 7e-10 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1) AT5G41030 43 / 0.0002 TCP TCP6 TCP family transcription factor (.1) AT5G23280 42 / 0.0005 TCP TCP7 TCP family transcription factor (.1) AT3G27010 42 / 0.0008 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074200 [exp] 655 / 0 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.004G199600 [exp] 378 / 1e-129 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.004G201400 [exp] 69 / 5e-13 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.006G222900 [exp] 63 / 9e-11 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.007G115900 [exp] 60 / 1e-09 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Potri.002G152200 [exp] 43 / 0.0002 AT2G45680 286 / 6e-95 TCP family transcription factor (.1) Potri.014G078500 [exp] 42 / 0.0004 AT2G45680 257 / 1e-83 TCP family transcription factor (.1) Potri.003G120201 [exp] 40 / 0.0004 AT2G45680 131 / 3e-38 TCP family transcription factor (.1) Potri.019G081800 [exp] 42 / 0.0005 AT1G72010 220 / 5e-68 TCP family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013313 [exp] 365 / 1e-124 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10005201 [exp] 360 / 8e-123 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10021322 [exp] 343 / 7e-115 AT5G22300 265 / 7e-85 nitrilase 4 (.1) Lus10018449 [exp] 318 / 1e-105 AT5G22300 281 / 6e-92 nitrilase 4 (.1) Lus10011234 [exp] 305 / 2e-100 AT5G22300 274 / 3e-89 nitrilase 4 (.1) Lus10016999 [exp] 120 / 7e-32 AT5G22300 83 / 5e-19 nitrilase 4 (.1) Lus10026464 [exp] 67 / 5e-12 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10020627 [exp] 66 / 8e-12 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10011198 [exp] 57 / 3e-10 AT5G22300 62 / 3e-12 nitrilase 4 (.1) Lus10004862 [exp] 58 / 5e-09 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [poplar] [flax] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G207700.1 pacid=42767932 polypeptide=Potri.006G207700.1.p locus=Potri.006G207700 ID=Potri.006G207700.1.v4.1 annot-version=v4.1 ATGGAGGAATCAACAAAAAATGCGGAGGCTAAGAAAGAAAAGAAGAGAGGACATCGTCCTCTCATCGTAGCACAATCACCGGCCGAAAAGGCCCACATCA TGGTCCCTGCCATGTGTAGCACTGCCATTTACCGCCTCAGAGGTGAACTGGGTCTCGGCTCCTGCGGTGCAGCCATTCACTGGCTCGTCCACCATGCCCG GCCTGATCTCATTCCCGCCCCCGAACCACCCACTAAGACTAAATCGGCTAAGACTTGCCCCAGTCGCAAAACGGACTCCGTTGATCATGACCCAATTCCA AAACCCGCTTGCATGGCGAGGGCAGATGGTGATACGCCTGTTTCTGATTTTCCGGCTACCGCCCGGGCAGCGAGGTCTCCGGTGAGAGCCACTGTGGTGC AGGCTTCGACGGTGGTTTTTGACACTCCGGCAACATTGGATAAAGCAGAGAGATTGATTGCTGGTGCAGCAGCATATGGGTCACAATTAGTTGTGTTTCC AGAAGCTTTTGTTGGTGGTTATCCTAGGAGTGTGAGGTTTGATGCTACAAATCCAACTGAAGGAGATGATGGTTTGCAGAGGTACTATGCCTCAGCTATT GATGTGCCTGGTCCTGAAGTTGAGAGACTTGCGAAAATTGCTGGTAAATATAAAGTACACTTAGTAATGGGAGTGGTGGAGAGAGCTGGATTTTATCTCT ACAGTACAATGCTGTTCTTTGATTCCCAGGGACAGCATCTCGGACAGCATCGCAAGATAACACTAGTGGCATCAGAGAGTGCAGTGTGGAATTCTGGAGG GAAATCAACATTGCCAATATATGAGACCTCGATTGGGAAAATTGGTGGCCTTACCTGTTGGGACAATAAATGGCCACTTCTAAGAACTGAGTTATATGAT AAAGGTGTAGAAATATATTGTGCGCCTACGGCTGATGCAGGGGAAATATGGAAAGCATCCATGATCCATATTGCCCTCGAAGGTGGTTGCTTTGTTCTTT CTGCAAATCAATTTTGCAGGAGGAGAGATTATCCATTTCCACCTGGAGATTCAAATGGTGATGCATCATTAGATGCCATCACATGCGCTGGAGGTAGTGT TATCATTTCACCATCAGGGACCATCTTGGCTGGTCCTAGTTACCATGGAGAATGTCTTATCTCAGCTGATCTAGACCTTGGAGATATCATTCTAGCAAAG ACAAAATATGGCGGAATTAGAACCATGTCAGGGTGA
AA sequence Show only first row Show all	>Potri.006G207700.1 pacid=42767932 polypeptide=Potri.006G207700.1.p locus=Potri.006G207700 ID=Potri.006G207700.1.v4.1 annot-version=v4.1 MEESTKNAEAKKEKKRGHRPLIVAQSPAEKAHIMVPAMCSTAIYRLRGELGLGSCGAAIHWLVHHARPDLIPAPEPPTKTKSAKTCPSRKTDSVDHDPIP KPACMARADGDTPVSDFPATARAARSPVRATVVQASTVVFDTPATLDKAERLIAGAAAYGSQLVVFPEAFVGGYPRSVRFDATNPTEGDDGLQRYYASAI DVPGPEVERLAKIAGKYKVHLVMGVVERAGFYLYSTMLFFDSQGQHLGQHRKITLVASESAVWNSGGKSTLPIYETSIGKIGGLTCWDNKWPLLRTELYD KGVEIYCAPTADAGEIWKASMIHIALEGGCFVLSANQFCRRRDYPFPPGDSNGDASLDAITCAGGSVIISPSGTILAGPSYHGECLISADLDLGDIILAK TKYGGIRTMSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.006G207700 [exp]	0	1
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	1.00	0.8971
					Potri.012G060751 [exp]	1.41	0.8892
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	1.73	0.8884
AT1G68410			Protein phosphatase 2C family ...		Potri.010G121600 [exp]	5.09	0.8389
AT1G21740			Protein of unknown function (D...		Potri.002G082000 [exp]	7.74	0.8547
AT2G25270			unknown protein		Potri.006G258700 [exp]	8.48	0.8800
AT1G71090			Auxin efflux carrier family pr...		Potri.008G127700 [exp]	13.26	0.8490
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.002G236200 [exp]	13.49	0.8522	Pt-XTR7.2
AT2G16250			Leucine-rich repeat protein ki...		Potri.014G196600 [exp]	13.85	0.8239
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	14.14	0.8701

Compare expression of checked genes

Potri.006G207700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.