Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11590 583 / 0 unknown protein AT5G22310 166 / 1e-44 unknown protein AT1G50660 151 / 4e-38 unknown protein AT3G20350 145 / 3e-36 unknown protein AT5G41620 122 / 1e-28 unknown protein AT1G64180 92 / 3e-19 intracellular protein transport protein USO1-related (.1) AT2G46250 84 / 1e-16 myosin heavy chain-related (.1) AT1G11690 59 / 2e-09 unknown protein AT1G64690 50 / 3e-06 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074300 [exp] 1104 / 0 AT3G11590 560 / 0.0 unknown protein Potri.004G199500 [exp] 462 / 4e-155 AT3G11590 399 / 6e-131 unknown protein Potri.009G160900 [exp] 410 / 1e-135 AT3G11590 399 / 9e-132 unknown protein Potri.001G096200 [exp] 166 / 6e-44 AT5G41620 523 / 6e-180 unknown protein Potri.003G135000 [exp] 162 / 4e-42 AT5G41620 494 / 1e-167 unknown protein Potri.014G093400 [exp] 161 / 8e-42 AT5G41620 347 / 8e-111 unknown protein Potri.002G166600 [exp] 161 / 9e-42 AT5G41620 345 / 6e-110 unknown protein Potri.011G090100 [exp] 146 / 8e-37 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 132 / 2e-32 AT1G50660 390 / 1e-126 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017001 [exp] 661 / 0 AT3G11590 587 / 0.0 unknown protein Lus10021324 [exp] 589 / 0 AT3G11590 530 / 3e-180 unknown protein Lus10013312 [exp] 248 / 3e-74 AT3G11590 285 / 1e-88 unknown protein Lus10013311 [exp] 249 / 2e-73 AT3G11590 332 / 1e-105 unknown protein Lus10005200 [exp] 240 / 3e-70 AT3G11590 322 / 1e-101 unknown protein Lus10043111 [exp] 154 / 3e-39 AT1G50660 616 / 0.0 unknown protein Lus10021521 [exp] 153 / 1e-38 AT1G50660 750 / 0.0 unknown protein Lus10032637 [exp] 152 / 2e-38 AT1G50660 625 / 0.0 unknown protein Lus10017543 [exp] 150 / 9e-38 AT5G41620 500 / 6e-170 unknown protein Lus10040076 [exp] 147 / 6e-37 AT1G50660 756 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G207800.1 pacid=42768063 polypeptide=Potri.006G207800.1.p locus=Potri.006G207800 ID=Potri.006G207800.1.v4.1 annot-version=v4.1 ATGCCAAGGCAAAAAGGAAGTGCCACCATGGAGGAATTGCTACCTGGTAAGATAAGGAAAAGAGTGTGTTCTTCATCGGCATCATCGTCCTCATCTATAA TTCAAAACTACAGATTCAAGAGAGCAATTTTGGTGGGTAAGAGGGGTGGATCCAGTACACCAGTGCCCACATGGAAGCTGATGGGGAAGAGGACCCCATC GTCTACACTGAGGGCCTTGGAGTCCTCACCGAAGTCACTAAATGGAAAGGCAAAGCAGCAACAGGCGCCAGTGTCAGCGAGGAAGCTGGCTGCTACCCTT TGGGAGATGAATGAGATGCCATCGCCACAAATGAAGGAGGAAATAGTGGAGGAGAGGAGGTTGAGGAAAGAGGGTAGAGGTAGAGAGAGGAGACCGGTGC ATTCAGGTTCTTTGCCTCCTCATTTGTCTGATCCTTCTCACAGTCCTGTTTCTGAGAGAATTGATCGATCTGGAACTGGCAGTTGCCATAGAAGAACATC ATCGATTTCTCAGAAGCTTAGGCTTATGGACCAGAGTATTGGAGCATTTGATTCAGTTAGTAATGCCAGTTTAATGGAGATTGAGACTCGTTCCCAAGCT CAAACTCCTAGTGGATCTACTGTTGGAGTTAAACCTCGTCTGAAGGATGTTAGTAATGCTTTGACTACATCAAAGGAACTACTTAAAATTATCAACCGTG TATGGGGTAATGAAGACAGGCCTTCATCAAGCCTGTCTCTCATCTCAGCCTTGCATGCTGAGCTTGAGAGGGCACGTTTGCAGGTCAATCACTTTATTCA AGAACAGTGCTCAGACCAGAATGAGATAAACTATCTATTGAAGTGCTTTGCTGAAGAAAAGGCAGCATGGAAAAACAAAGAGCAGAAAGTGGTTGAGGCT GCTATTGAGTCCATTGCAGGAGAACTGGATGTAGAGAAGAAGCTGAGAAGACGATTTGAAAGCTTGAACAAGAAGCTGGGGAAGGAACTGGCCGAGACAA AGGCATCTCTATTGAAGGCAGTGAAAGAACTTGAGAGTGAGAAGAGAGCAAGAGTTGTAATGCAGAAGGTATGTGACGAACTAGCCAGGGATATTGGTGA TGATAAAGCTGAAGTTGAAGAACTGAAGAGGGAATCTGCAAAACTTTGTGAAGAGGTTGAGAAGGAAAGGGAGATGATGCAGTTAGCTGACGTGTTACGT GAGGAGAGAGTCCACATGAAACTTTCAGAAGCTAAATATCAGCTTGAGGAGAAAAATGCAGCTGTTGATAAACTTCAGAACCAGCTTGAAGCTTTTCTAG GAACCAAAAGAACTAAAGAAAAAGGGCGTAGTTCTTCTAATTATATGAATGATGAAGAGATAGCTGCTTACCTAAGTAAAAATCGTTTTGTTTCTCATCA AAGTGAAATAAACGAGGAGGATGGAGAAGTAGATGATGGGGTAATATGCGAGGAAGGCTCTGCTGAAAGTGATCTTCATTCCATAGAATTGAATATGGAT AACAATAACAAAAGCTACAAGTGGACAACATATCCTTCTGGAACTCCCCGCGATGTGAGAAAGGCAGCAATTGATGAAGAAGACATCAAAGGGAGGAAAT CTACCTCAAGCAAATTACCCCGGAGAAGCACTTCTCTGCAAAGAAGCATATCGGATGGAGTGGAATGGGACACCCGAAATGAGAGGGTCCCATTTGCAGG AGACGGGATAGATTGGGGGAGATTTTCCGGACTGGAGAGGCAAGGGCAAGGAAAAGTTTATGGAGATGAAATGCATGGGCATCAATCAGTGAAGGGTCTT AGGGACTACTTATTGTCTGGTTCTAGGTTAGATTCTCCAAGAGGGTATGCTAGTCCTATGCGACAAGCGGGGCAGCTGCGGTCCTCACTAGACCCAAGCA ATCTAGCGCAAGAGAGACCACCTGTGATACCAGGGAATGTTTCTAAGTCAAGGCTGTCAGAGGCCAAAGCTGAAGGAATGAATTTAAGAAAATCAAAATG GTGA
AA sequence Show only first row Show all	>Potri.006G207800.1 pacid=42768063 polypeptide=Potri.006G207800.1.p locus=Potri.006G207800 ID=Potri.006G207800.1.v4.1 annot-version=v4.1 MPRQKGSATMEELLPGKIRKRVCSSSASSSSSIIQNYRFKRAILVGKRGGSSTPVPTWKLMGKRTPSSTLRALESSPKSLNGKAKQQQAPVSARKLAATL WEMNEMPSPQMKEEIVEERRLRKEGRGRERRPVHSGSLPPHLSDPSHSPVSERIDRSGTGSCHRRTSSISQKLRLMDQSIGAFDSVSNASLMEIETRSQA QTPSGSTVGVKPRLKDVSNALTTSKELLKIINRVWGNEDRPSSSLSLISALHAELERARLQVNHFIQEQCSDQNEINYLLKCFAEEKAAWKNKEQKVVEA AIESIAGELDVEKKLRRRFESLNKKLGKELAETKASLLKAVKELESEKRARVVMQKVCDELARDIGDDKAEVEELKRESAKLCEEVEKEREMMQLADVLR EERVHMKLSEAKYQLEEKNAAVDKLQNQLEAFLGTKRTKEKGRSSSNYMNDEEIAAYLSKNRFVSHQSEINEEDGEVDDGVICEEGSAESDLHSIELNMD NNNKSYKWTTYPSGTPRDVRKAAIDEEDIKGRKSTSSKLPRRSTSLQRSISDGVEWDTRNERVPFAGDGIDWGRFSGLERQGQGKVYGDEMHGHQSVKGL RDYLLSGSRLDSPRGYASPMRQAGQLRSSLDPSNLAQERPPVIPGNVSKSRLSEAKAEGMNLRKSKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11590			unknown protein		Potri.006G207800 [exp]	0	1
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.003G107600 [exp]	8.36	0.8784
AT3G09070			Protein of unknown function (D...		Potri.006G096600 [exp]	9.94	0.8250
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	15.29	0.8136
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	18.76	0.8440
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	19.69	0.8546
AT5G60980			Nuclear transport factor 2 (NT...		Potri.017G094600 [exp]	21.54	0.8323
AT3G11590			unknown protein		Potri.016G074300 [exp]	24.59	0.8373
AT4G16850			unknown protein		Potri.018G097900 [exp]	25.27	0.8540
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.016G001300 [exp]	26.83	0.8362
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	28.98	0.8171

Compare expression of checked genes

Potri.006G207800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.