Plant FIBer expression Database

Potri.006G208300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11560 1056 / 0 LETM1-like protein (.1.2.3.4)
AT5G06220 1003 / 0 LETM1-like protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G074900
[exp]
1551 / 0 AT3G11560 1033 / 0.0 LETM1-like protein (.1.2.3.4)
Potri.001G187100
[exp]
166 / 1e-42 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021329
[exp]
1141 / 0 AT3G11560 976 / 0.0 LETM1-like protein (.1.2.3.4)
Lus10017005
[exp]
1136 / 0 AT3G11560 975 / 0.0 LETM1-like protein (.1.2.3.4)
Lus10038268
[exp]
164 / 1e-41 AT3G11560 147 / 4e-37 LETM1-like protein (.1.2.3.4)
Lus10025835
[exp]
158 / 2e-39 AT1G52155 353 / 2e-114 unknown protein
Lus10029426
[exp]
123 / 4e-29 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07766 LETM1 LETM1-like protein
Representative CDS sequence
>Potri.006G208300.2 pacid=42769557 polypeptide=Potri.006G208300.2.p locus=Potri.006G208300 ID=Potri.006G208300.2.v4.1 annot-version=v4.1
ATGGAAGTTAAATTGCAGCATAGTAGCTTCTTAAATTCAAGTTCTTCAAATCCATGCCTTTCACGAAATTCAATTGTTTCTAGTATTTCCTGCAAAAGAG
TAGCTCACTTGGATTATCTTCTGATCAATTGGGGCAATTCAAGGAAAAGATACCCCATGAAGCATACGTTGTGGAGGAATGGAAATCATAGTCTTGATTA
TCAATCAATTGGATATAAGAAACTTAATCTGACACATATGAAGACAAGAAGGACGGGGCACCTTTTTCCCCTAGCATCCGGTGATGATGGTGTTACTGTC
AATGGGACTCCTTCTGCAAGTGCCAACAGTGATGTGGAGGATATGAGAGTTCAACTCAACCAGTCGCTACAAGGTGAAGATTCTGGTGATAAACTTGTTC
AATCTTTACACGATGCAGCAAGGGTTTTTGAGGTGGCAATTAAAGAACAGGGTTTGCTATCAAAGTTTTCTTGGCTTTCCACGGCCTGGCTTGGTATAGA
TAGGAACGCATGGGTGAAAACGCTATGCTATCAGGCTTCTGTTTGCTCCTTACTACAAGCAGCACATGAGATTTCATCCCGAGGTGATAGTAGAGACAGA
GATGTAAATATTTTTGTTCAAAGGAGTTTATTACGGCAATCTGCTCCCCTGGAGAGCTTGATCAGAGATAAACTATCTGCCAAACAACCAGAAGCTTATG
AATGGTTTTGGTCTAAGCAAGTTCCGATAGTGGTGACTTCTTTTCTTAATTATCTTGAAGAGGACCCACGCTTTACTGCTGCCACTGCTGTGTTTGGAAA
AGGCATGTCCTCGAGTCCAGGCAATGGAAGTGATGTTTCACTTCTTTTACTGGCACTGACTTGTAATGCTGCAATCATGAAACTTGGCCCCACAAAAGTT
TCTTGCCCACAATTCTTTTCCATGATCTCAGATATAACTGGTAGATTGATGGACATGCTGGTTGATTTCATTCCTGTACGCCAAGCTTATCATTCTATAA
AGCATATTGGTCTACGCAGAGAATTTCTTGTCCATTTTGGTCCTCGAGCCGTGGCATGCAGAGTACAAAATGATTGTGGTTCAGAAGAGGTGATTTTCTG
GATTAATCTTGTACAGAAGCAGCTCCAACGAGCTATAGATAGGGAGAGAATGTGGTCAAGACTAACAACATCTGAAAGTATTGAGGTTTTAGAGAAGGAT
TTGGCTGTATTTGGATTCTTTATTGCCTTAGGAAGAAGTACACAATCTTTTTTATCAGCAAATGGATTTGATATTCTAGATGATCCTATTGAAGGCTTCA
TCAGGTACCTTGTCGGGGGTAGTGTTTTGTACTATCCTCAACTTTCATCCATAAGCTCATATCAGTTGTATGTAGAGGTTGTCTGCGAGGAGCTGGATTG
GCTTCCTTTTTATCCAGGCAACATTGGCACCCCAAATCTGTCTCATGGACACAAAAATAAACAGAAGGATCCTCCAAATGCTGAAGCTATCCCTCAAGTA
TTATACGTCTGCTCCCATTGGATCCAAAGCTTTATTAAATACAGTAAATGGCTAGAGAATCCATCCAATGTTAAGGCAGCAAGGTTTCTTTCCAGGGGGC
ACAACAAATTAATCGAGTGCATGGAAGAACTGGGAATGTCTCGGAGAATGACAGAAAGCAATATCAATTATTCTGTTGAGATAACAGGACCTGCAATTAA
TTTGACCACTGGCAAAGAGACAGATTCGTTCAATAAGGCATTGGAGAGTGTTGAAGGAGCTCTTGTGAGACTGGAAAAATTACTTAAAGAGTTGCATGTA
TCAAGCTCTAATTCTGGGAAAGAGCATTTAAAAGCTGCTTGTTCTGATCTTGAGAAAATAAGGAAACTGAAGAAAGAAGCTGAATTTCTGGAGGCATCTT
TCAGAGCAAAAGCGGCTTCGCTTCAGCAGGGAGAAGATGAAAGTAGTCTACAAACTTCTATTAGTGAGCAGCAACAGTACTTCAAAGGGAAAGGGAGGAA
GAATGCTAATGTGAGGTTAGATAGAAGTAAAAGTAAATTTCAAGGAGCGTGGAACCTCCTTGCGCGCTCTCCAACCAAGAAACCTGGCCCTGATGCTGCA
GTTGTAGATGCATCTGGAGATGCAAATTTTGGGCAAACTACAAGTACGGGTATTGGAGAGTCCGAGTCCAATGAAATTCATCGTTTTGAACTTCTAAGGA
ATGAGCTCATGGAACTCGAAAAACGGGTCCGGAGAAGCACTGATCAATATGAAAATGAAGAGGATATTAAGGTTACAGATGGTGATGAGGCTGCAAGTTC
TCAATTAATCCAGGTTGAAATGAGTGAAAATGTCATTGAAAAATCAATTGTAAAGCTAAAGGAAACAAGCACGGATGTCTTGCAAGGAACTCAGCTTCTA
GGTATTGATGTTGCTGCTGCAATGGGGTTTCTTAAAAGGGTCTTGATTGGAGATGAGTTAACAGAGAAAGAAAAAAAAGTTCTCTTGAGAACCCTGACGG
ATTTGGCATCAGTGGTTCCTATCGGTGTTCTTATGCTTCTTCCAGTCACTGCTGTGGGGCATGCAGCAATGTTGGCTGCTATCCAGAGATATGTGCCAGC
TTTGATACCATCCACATATGGAGCAGAAAGGTTGGATCTCCTGAGACAGCTTGAGAAAGTGAAGGAAATGGAAACCAGTGAACTGGATGCCAAAGAAAAT
GGAGAGATACTATCCTGA
AA sequence
>Potri.006G208300.2 pacid=42769557 polypeptide=Potri.006G208300.2.p locus=Potri.006G208300 ID=Potri.006G208300.2.v4.1 annot-version=v4.1
MEVKLQHSSFLNSSSSNPCLSRNSIVSSISCKRVAHLDYLLINWGNSRKRYPMKHTLWRNGNHSLDYQSIGYKKLNLTHMKTRRTGHLFPLASGDDGVTV
NGTPSASANSDVEDMRVQLNQSLQGEDSGDKLVQSLHDAARVFEVAIKEQGLLSKFSWLSTAWLGIDRNAWVKTLCYQASVCSLLQAAHEISSRGDSRDR
DVNIFVQRSLLRQSAPLESLIRDKLSAKQPEAYEWFWSKQVPIVVTSFLNYLEEDPRFTAATAVFGKGMSSSPGNGSDVSLLLLALTCNAAIMKLGPTKV
SCPQFFSMISDITGRLMDMLVDFIPVRQAYHSIKHIGLRREFLVHFGPRAVACRVQNDCGSEEVIFWINLVQKQLQRAIDRERMWSRLTTSESIEVLEKD
LAVFGFFIALGRSTQSFLSANGFDILDDPIEGFIRYLVGGSVLYYPQLSSISSYQLYVEVVCEELDWLPFYPGNIGTPNLSHGHKNKQKDPPNAEAIPQV
LYVCSHWIQSFIKYSKWLENPSNVKAARFLSRGHNKLIECMEELGMSRRMTESNINYSVEITGPAINLTTGKETDSFNKALESVEGALVRLEKLLKELHV
SSSNSGKEHLKAACSDLEKIRKLKKEAEFLEASFRAKAASLQQGEDESSLQTSISEQQQYFKGKGRKNANVRLDRSKSKFQGAWNLLARSPTKKPGPDAA
VVDASGDANFGQTTSTGIGESESNEIHRFELLRNELMELEKRVRRSTDQYENEEDIKVTDGDEAASSQLIQVEMSENVIEKSIVKLKETSTDVLQGTQLL
GIDVAAAMGFLKRVLIGDELTEKEKKVLLRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPALIPSTYGAERLDLLRQLEKVKEMETSELDAKEN
GEILS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.006G208300
[exp]
0 1
AT4G26850 VTC2 mannose-1-phosphate guanylyltr... Potri.011G087200
[exp]
2.64 0.9264 Pt-VTC2.1
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Potri.016G040200
[exp]
6.48 0.9424 LYC.2
AT5G20380 PHT4;5 phosphate transporter 4;5 (.1) Potri.006G062300
[exp]
7.41 0.9227
AT1G16720 HCF173 high chlorophyll fluorescence ... Potri.007G003500
[exp]
7.74 0.9264
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Potri.001G265400
[exp]
8.24 0.8893
AT5G64940 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-R... Potri.007G082500
[exp]
8.36 0.9294
AT3G17930 unknown protein Potri.015G036500
[exp]
8.48 0.9404
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.016G074900
[exp]
11.48 0.9029
AT1G33110 MATE efflux family protein (.1... Potri.013G069700
[exp]
11.61 0.9247
AT5G35970 P-loop containing nucleoside t... Potri.013G073900
[exp]
12.64 0.9232

Potri.006G208300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.