Plant FIBer expression Database

Potri.006G208400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36090 274 / 1e-90 F-box family protein (.1)
AT2G27310 241 / 1e-77 F-box family protein (.1)
AT3G44326 231 / 3e-73 F-box family protein (.1)
AT5G48170 40 / 0.0007 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G199300
[exp]
285 / 1e-94 AT2G27310 248 / 3e-80 F-box family protein (.1)
Potri.009G160700
[exp]
259 / 3e-84 AT2G27310 221 / 9e-70 F-box family protein (.1)
Potri.002G054500
[exp]
129 / 3e-34 AT2G27310 122 / 2e-31 F-box family protein (.1)
Potri.001G452000
[exp]
127 / 3e-33 AT2G36090 115 / 2e-29 F-box family protein (.1)
Potri.005G208200
[exp]
121 / 3e-31 AT2G27310 130 / 3e-34 F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021330
[exp]
369 / 1e-127 AT2G36090 266 / 2e-87 F-box family protein (.1)
Lus10017006
[exp]
360 / 8e-124 AT2G36090 255 / 4e-83 F-box family protein (.1)
Lus10013309
[exp]
223 / 3e-70 AT2G27310 247 / 4e-80 F-box family protein (.1)
Lus10003731
[exp]
122 / 2e-31 AT2G27310 160 / 3e-46 F-box family protein (.1)
Lus10028024
[exp]
120 / 4e-31 AT2G27310 158 / 4e-45 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.006G208400.1 pacid=42768745 polypeptide=Potri.006G208400.1.p locus=Potri.006G208400 ID=Potri.006G208400.1.v4.1 annot-version=v4.1
ATGTCTTTCTCCACGCAACCACCGTGTTCCTCCAACACCGCAACTACCACCGTGGAACCCTCCATTGCTACCTCAATCTCCACCATCCACCCGGACATCC
TCCAAGCCCACATCCTAAACCGACTAGACGGCCTCTCCTTGGTCTCCACCGCATGCACTTCCACCGAACTAAATTCACTAGCATCCCAACAAGACTTATG
GACCAACATATGCCACTCCATTTGGCCTTCCACTAACACGCCACGTATACGCGAAATAATCTCCCGCTTACCCAGCGGCTGGCGCTCTCTCTTCTCTGAA
TCCTTCCCTCTCACCACAGGCCCCCGGGTAAATCCCCCACGAGACCACGACCATCCATCAGAACTGATCTCAGCCGTCGATATTCATTACAAAAATAAGC
TGATTTTTTCCAAGGTTGTAGAAACAGAGACCTCAAGCTCGTGGTTTTTGTGCTCTCCCTTCAGAATCGACATGCTTGATCCGAAGGACACGTGTCCGAC
TCCCATACCGAATTCAGGTTCTGAGGAAACATGTCGCGATCTGGCTGGTGATTTGAGTTTGAGCTGGATATTGCTTGACCCGACCCGTTTACGGTCGGTG
AACCTATCGAGTCACAAACCGGTGTCGGTTCAGAGGCATTGGCTCAGCGGCGAAGTGCACGCGCGGTTTGCGACAGTGTTGGCGGCAGGAGAGAGAGGAT
CAGCATCAGAGAGTGTGCAGTGTGGGATAGTGGTCACGTGCGGAGGGGGAGCCCAAGGAGGGGAGATGCAGGTGAGGGGAGTGAGCTTGCAAGTGGAGGA
TATGGATGGTGTTTTCTTAAACGGGAAGGGTAGTTTGGGTGTTTTGAATACGGGGTTTGAGGGTAAAAAGGGAATGAGCGGGAGGAGGGAAATGGAGGGA
CGGAAAAGGTACGGGATGTTTTTGGAAATGAAGAGGGAGAGGAGGGAGAGGAGGTTGAAGAAGGAAGGGGCTTTGGACATGCTGTGTGTGTCTTTCGGGG
TCATGGTTCTTGTCTCTCTTGGGTTATTTCATCTGCTGAGATGA
AA sequence
>Potri.006G208400.1 pacid=42768745 polypeptide=Potri.006G208400.1.p locus=Potri.006G208400 ID=Potri.006G208400.1.v4.1 annot-version=v4.1
MSFSTQPPCSSNTATTTVEPSIATSISTIHPDILQAHILNRLDGLSLVSTACTSTELNSLASQQDLWTNICHSIWPSTNTPRIREIISRLPSGWRSLFSE
SFPLTTGPRVNPPRDHDHPSELISAVDIHYKNKLIFSKVVETETSSSWFLCSPFRIDMLDPKDTCPTPIPNSGSEETCRDLAGDLSLSWILLDPTRLRSV
NLSSHKPVSVQRHWLSGEVHARFATVLAAGERGSASESVQCGIVVTCGGGAQGGEMQVRGVSLQVEDMDGVFLNGKGSLGVLNTGFEGKKGMSGRREMEG
RKRYGMFLEMKRERRERRLKKEGALDMLCVSFGVMVLVSLGLFHLLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G36090 F-box family protein (.1) Potri.006G208400
[exp]
0 1
AT4G24150 GRF ATGRF8 growth-regulating factor 8 (.1... Potri.001G082700
[exp]
6.40 0.7883
AT4G11740 SAY1 Ubiquitin-like superfamily pro... Potri.001G109500
[exp]
8.83 0.8099
AT2G41060 RNA-binding (RRM/RBD/RNP motif... Potri.005G081600
[exp]
9.00 0.8301
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.014G051200
[exp]
11.13 0.8007
AT2G28550 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAG... Potri.008G045300
[exp]
14.69 0.7920
Potri.019G059350
[exp]
15.29 0.8411
Potri.018G096021
[exp]
15.87 0.8395
AT3G48880 RNI-like superfamily protein (... Potri.015G139700
[exp]
20.44 0.8162
AT5G55340 MBOAT (membrane bound O-acyl t... Potri.008G145700
[exp]
20.71 0.8253
Potri.019G120766
[exp]
21.72 0.8393

Potri.006G208400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.