Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08370 335 / 1e-113 DCP1, ATDCP1 decapping 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075200 [exp] 531 / 0 AT1G08370 294 / 1e-97 decapping 1 (.1) Potri.009G160200 [exp] 373 / 2e-128 AT1G08370 377 / 7e-130 decapping 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017007 [exp] 416 / 2e-145 AT1G08370 351 / 8e-120 decapping 1 (.1) Lus10043399 [exp] 362 / 4e-124 AT1G08370 375 / 2e-129 decapping 1 (.1) Lus10034186 [exp] 359 / 4e-123 AT1G08370 380 / 2e-131 decapping 1 (.1) Lus10021331 [exp] 344 / 3e-116 AT1G08370 305 / 1e-100 decapping 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF06058 [poplar] [flax] DCP1 Dcp1-like decapping family
Representative CDS sequence Show only first row Show all	>Potri.006G208600.1 pacid=42769338 polypeptide=Potri.006G208600.1.p locus=Potri.006G208600 ID=Potri.006G208600.1.v4.1 annot-version=v4.1 ATGTCACAGACAGGGAAATTGATGCCAAATCTGGATCAACAGAGCACTAAGATGCTCAATCTCACTGTACTCCAGCGAATGGATCCTTTCATCGAAGAGA TTTTAATCACAGCTGCGCATGTCACTTTTTACGCTTTCAATATTGAAACCAATCAGTGGAGCCGCAAGGATGTTGAAGGATCTCTCTTTGTAGTCAAGAG GAATACTCAACCGCGGTTTCAGTTTATTGTAATGAACCGGCGAAACACAGAAAACTTAGTGGAGAATTTATTGGGGGATTTTGAGTATGAAGTTCAAGCT CCGTATTTGTTGTATCGGAATCAATCTCAAGAAGTTAATGGTATTTGGTTTTACAATCGGCGTGAATGTGAGGATGTTGCCAACCTCTTTACTAGGATCC TTAATGCTTACTCAAAGGTTCCTGCAAAGCCAAAAGTAGCTTCAGGCAAAAGTGAATATGAGGAGCTTGAAGCAGTCCCAAATATGTCAGTGTTTGAAGG TCCCTTGGAACCATCATCAACTGCCTCTGCTGCCAACGATAGCACTGAAGATTCTTCGTTTGAGAACTTCTTTAGTACAGCCATGAATATTGGAAGTACT GCTTCTAGTGTAGCAAATTCAAGACAGCCATATCAGCCTTCTCCCACCATTCCATTATCCTCCCATACACCTAGTGTTGTTATGCCCTCTCCACTAGTTC CACAAATACCTTCTCTTCCTCTTTCATCTTTATCCACCTCAAAAACCATTCATGGCACTCCTGATCCAATCAGCAGTGGCAGTCATGTCACTAATCTTGT GAAGCCCTCATTTTTTGCACCCCTTTCTTCCTCATCTGTATTGCTGCCACCCCCTATCTCCTCGCCACTTACCAGTGCTCCTGCACTTCAGCCTCCCCTA AATCTGCAACGACCATATGGCACTCCAATGCTTCAACCCTTCCCACCTCCCACACCACCACCATCTCTTACTCCTAGTTCAACTGCCACTACACCTCTTA TTAGCAGGGACAAAGTCCGTGATGCACTTCTGATGCTTATTCAGGATGATCAATTCATTGACATGTTTCATCAAGCACTGCTGAAGGTGCACCATCCATG A
AA sequence Show only first row Show all	>Potri.006G208600.1 pacid=42769338 polypeptide=Potri.006G208600.1.p locus=Potri.006G208600 ID=Potri.006G208600.1.v4.1 annot-version=v4.1 MSQTGKLMPNLDQQSTKMLNLTVLQRMDPFIEEILITAAHVTFYAFNIETNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQA PYLLYRNQSQEVNGIWFYNRRECEDVANLFTRILNAYSKVPAKPKVASGKSEYEELEAVPNMSVFEGPLEPSSTASAANDSTEDSSFENFFSTAMNIGST ASSVANSRQPYQPSPTIPLSSHTPSVVMPSPLVPQIPSLPLSSLSTSKTIHGTPDPISSGSHVTNLVKPSFFAPLSSSSVLLPPPISSPLTSAPALQPPL NLQRPYGTPMLQPFPPPTPPPSLTPSSTATTPLISRDKVRDALLMLIQDDQFIDMFHQALLKVHHP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.006G208600 [exp]	0	1
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	6.16	0.6290
AT1G05270			TraB family protein (.1)		Potri.017G038500 [exp]	9.48	0.6044
AT2G26920			Ubiquitin-associated/translati...		Potri.001G225200 [exp]	23.49	0.5593
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.001G215400 [exp]	24.53	0.5707
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.002G195132 [exp]	26.17	0.5752
AT5G50090			unknown protein		Potri.008G186700 [exp]	35.32	0.5249
AT3G16270			ENTH/VHS family protein (.1)		Potri.001G187000 [exp]	36.41	0.5503
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	37.38	0.5717
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	38.72	0.5372
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Potri.010G188700 [exp]	42.08	0.5601

Compare expression of checked genes

Potri.006G208600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.