Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SPY.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11540 1506 / 0 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 302 / 5e-88 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G32450 72 / 1e-12 Calcium-binding tetratricopeptide family protein (.1) AT5G56290 67 / 3e-11 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT5G63200 66 / 1e-10 tetratricopeptide repeat (TPR)-containing protein (.1) AT1G05150 59 / 1e-08 Calcium-binding tetratricopeptide family protein (.1) AT1G22700 55 / 5e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT4G37460 55 / 3e-07 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37590 53 / 8e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37130 52 / 2e-06 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075700 [exp] 1734 / 0 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.019G025600 [exp] 293 / 1e-84 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 285 / 5e-82 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G234900 [exp] 72 / 1e-12 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.012G092000 [exp] 70 / 5e-12 AT5G63200 759 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G052200 [exp] 61 / 5e-09 AT4G37460 1333 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G473100 [exp] 59 / 1e-08 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.011G170000 [exp] 59 / 2e-08 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.019G085200 [exp] 58 / 2e-08 AT1G22700 324 / 6e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021336 [exp] 1580 / 0 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 1404 / 0 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003113 [exp] 294 / 4e-85 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 294 / 5e-85 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 292 / 2e-84 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010627 [exp] 78 / 2e-14 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10033182 [exp] 78 / 2e-14 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10003112 [exp] 70 / 4e-13 AT3G04240 305 / 2e-98 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001406 [exp] 65 / 2e-10 AT4G37460 1271 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021972 [exp] 61 / 6e-10 AT1G22700 312 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat CL0113 [poplar] [flax] GT-B PF13844 [poplar] [flax] Glyco_transf_41 Glycosyl transferase family 41
Representative CDS sequence Show only first row Show all	>Potri.006G208900.3 pacid=42768246 polypeptide=Potri.006G208900.3.p locus=Potri.006G208900 ID=Potri.006G208900.3.v4.1 annot-version=v4.1 ATGGCGTGGACAGAGAATGATGCTGGTAATGTGAGAGAGAAGGAACCAACTGGAGATAATGGTTTCTTGAAAGGATCACAGCCTTCACCTGACCCTAGTG GCTCTCGTGTTGGTTCGTCTCCAGCACAGAAGGGGTTTGACGGGAAGGACGCACTCTCTTATGCCAACATTCTTCGATCCAGAAATAAATTTGCTGATGC TCTTGCTCTTTACGAGAGTGCCCTGGAGAATGATAGTGGAAATGTTGAGGCTTACATCGGAAAAGGAATATGCCTGCAGATGCAGAACATGGAAAGGCTT GCTTTTGATAGTTTTGCTGAAGCTATTAAGCTGGACCCAGAGAATGCGTGTGCCCTGACACATTGTGGTATATTGTACAAGGATGAGGGTCGTCTGTTAG AGGCTGCTGAATCGTATCACAAGGCTTTGAAAGCTGATCCTTCATACAAGCCAGCTTCGGAGTGCCTAGCCATTGTTTTAACAGATCTTGGAACCAGCTT AAAGCTCTCTGGTAATACACAAGAGGGAATTCAGAAGTATTATGATGCTCTTAAAGTAGATCCGCACTATGCGCCTGCATATTATAACCTTGGTGTTGTG TATTCTGAAATGATGCAATATGACACTGCCCTTAGTTGCTATGAGAAGGCTGCAATAGAGAGGCCTATGTATGCTGAAGCATACTGCAACATGGGTGTCA TCTACAAAAACAGAGGTGACCTAGAATCAGCCATTGCCTGTTATGAGAGGTGTCTAGCTGTGTCACCCAACTTTGAGATTGCAAAGAATAATATGGCAAT AGCATTGACAGATTTAGGAACAAAAGTTAAACTTGAGGGAGATATCAATCAAGGTGTGACATATTACAAGAAGGCTTTGTATTATAACTGGCACTATGCT GATGCCATGTATAATCTTGGTGTTGCTTATGGTGAAATGCTGAAGTTTGAGATGGCAATTGTGTTCTATGAACTTGCTTTCCACTTCAATCCTCACTGCG CAGAGGCATGCAACAATTTAGGTGTAATATACAAAGACCGAGACAACCTTGATAAAGCTGTGGAGTGTTATCAGTTAGCTTTATCAATCAAACCAAACTT CTCTCAGTCATTGAACAACCTTGGTGTTGTCTACACTGTCCAGGGTAAAATGGATGCTGCTGCAAGCATGATTGAGAAAGCTATCATGGCAAATCCCACA TATGCTGAAGCATATAATAACTTAGGAGTTCTTTACAGAGATGTTGGCAATATAACTATGGCAATCAGTGCTTACGAGCAATGCCTGGAGATAGATCCTG ATTCTCGCAATGCAGGCCAGAATCGGTTGCTTGCAATGAACTACATAAACGAGGGACATGATGATAAGCTTTTTCAGGCTCACAGGGAATGGGGTAGGCG CTTTATGAGGTTGTATCCGCAGTACACTTCGTGGGACAACCCAAAAGTTCCAGAGAGACCACTTGTGATTGGATATGTATCTCCGGATTATTTTACTCAT TCTGTATCTTATTTCATCGAGGCCCCTCTTGTCTATCATGACTATGCAAATTATATGGTGGTTGTCTATTCAGCAGTTGTGAAGTCTGATGCAAAAACGA ATAGGTTTAGGGAGAAAGTTTTAAAAAAGGGTGGGATGTGGAGGGATATATACGGGATTGATGAGAAGAAGGTTGCAAGCATGATTAGAGAAGATAAAGT TGACATTTTGGTAGAACTCACTGGACATACAGCTAACAATAAGTTGGGAATGATGGCGTGCCGACCAGCACCTGTTCAGGTGACTTGGATTGGTTACCCG AACACAACTGGCTTGCCTACCATTGATTACAGAATTACTGATTCATTCACTGACCCTCCTCATACTAAACAAAAGCATGTTGAGGAGTTGGTTCGTTTAC CAGAATGCTTCCTTTGTTACATACCTTCTCCAGAGGCTGGGCCTGTTACTCCAACTCCTGCTCTTTCTAATGGCTTTATCACATTTGGTAGCTTTAATAA TCTGGCAAAGATAACACCTAAGGTATTGCAAGTTTGGGCTAGGATACTCTGTGCAGTTCCGAACTCCCGCCTTGTGGTGAAATGCAAGCCATTTGGCTGT GATAGTGTTAGACAGAGATTCCTTACAGTGTTGGAGCAGCTGGGGTTGGAACCACTGCGTGTCGATCTCCTGCCTCTAATTCTTCTTAATCATGATCACA TGCAAGCATATTCTTTAATGGACATAAGCTTGGATACTTTTCCATATGCTGGTACAACAACAACATGTGAATCTTTGTACATGGGAGTTCCATGCATTAC TATGGCTGGTGCTGTACATGCTCACAATGTTGGCGTGAGTCTTCTCAGCAAAGTTGGGTTAGGACATTTGGTTGCCAAAAATGAAGAGGAATACGTTCAA TTGGCACTACAACTGGCCTCAGACATTTCAGCTCTCTCAAACTTGAGGATGAGTCTCCGGGAACTTATGTCTAAGTCTCCAGTCTGCGATGGACCAAATT TTACTCTTGGTTTAGAGACAACATACCGGAACATGTGGCACAGATACTGTAAGGGTGATGTGCCATCTTTAAGGCGCATAGAACTGCTACAACAGCAGGG GATTCCTGAGGATGTACCTATCAAGAATTCTGATTCAACGACGATTACATCGTCAAGAGATGGCCCTCCTGAGTCAAGAGATGGCCTACCTGAGTCTGTC AAAGCAAATGGATTCAGTGCAGTCTCACCACCCACAGTCAATCATTCTTGTGGAGAAAACAGGAGTCAGGTAAATAATACTATAAACTCAGGCAAGCTGA GCTAA
AA sequence Show only first row Show all	>Potri.006G208900.3 pacid=42768246 polypeptide=Potri.006G208900.3.p locus=Potri.006G208900 ID=Potri.006G208900.3.v4.1 annot-version=v4.1 MAWTENDAGNVREKEPTGDNGFLKGSQPSPDPSGSRVGSSPAQKGFDGKDALSYANILRSRNKFADALALYESALENDSGNVEAYIGKGICLQMQNMERL AFDSFAEAIKLDPENACALTHCGILYKDEGRLLEAAESYHKALKADPSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKYYDALKVDPHYAPAYYNLGVV YSEMMQYDTALSCYEKAAIERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVTYYKKALYYNWHYA DAMYNLGVAYGEMLKFEMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPT YAEAYNNLGVLYRDVGNITMAISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFQAHREWGRRFMRLYPQYTSWDNPKVPERPLVIGYVSPDYFTH SVSYFIEAPLVYHDYANYMVVVYSAVVKSDAKTNRFREKVLKKGGMWRDIYGIDEKKVASMIREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYP NTTGLPTIDYRITDSFTDPPHTKQKHVEELVRLPECFLCYIPSPEAGPVTPTPALSNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFGC DSVRQRFLTVLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCITMAGAVHAHNVGVSLLSKVGLGHLVAKNEEEYVQ LALQLASDISALSNLRMSLRELMSKSPVCDGPNFTLGLETTYRNMWHRYCKGDVPSLRRIELLQQQGIPEDVPIKNSDSTTITSSRDGPPESRDGLPESV KANGFSAVSPPTVNHSCGENRSQVNNTINSGKLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	0	1	Pt-SPY.2
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	1.00	0.9221
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	2.82	0.9000
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G182900 [exp]	3.46	0.9042
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Potri.006G148400 [exp]	4.69	0.8857
AT5G24810			ABC1 family protein (.1.2)		Potri.018G000101 [exp]	5.47	0.8996
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	5.65	0.9059
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	5.91	0.9036
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	6.32	0.9038
AT5G14770			Tetratricopeptide repeat (TPR)...		Potri.019G043101 [exp]	7.14	0.8907
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.008G011800 [exp]	9.16	0.8700

Compare expression of checked genes

Potri.006G208900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.