Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12910 391 / 3e-136 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) AT3G26640 385 / 8e-134 LWD2 LIGHT-REGULATED WD 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G24520 350 / 4e-120 ATTTG1, URM23, TTG1 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT4G35050 61 / 3e-10 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 61 / 3e-10 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT1G29260 61 / 3e-10 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT5G67320 56 / 1e-08 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G18830 56 / 4e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G63460 47 / 2e-05 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT1G53090 46 / 4e-05 SPA4 SPA1-related 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075800 [exp] 578 / 0 AT1G12910 345 / 2e-118 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G140700 [exp] 396 / 3e-138 AT1G12910 677 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G220500 [exp] 395 / 4e-138 AT1G12910 679 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G006100 [exp] 355 / 2e-122 AT5G24520 577 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.015G002600 [exp] 347 / 3e-119 AT5G24520 565 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.011G066600 [exp] 59 / 4e-10 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G057600 [exp] 60 / 6e-10 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.004G175300 [exp] 56 / 2e-08 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 53 / 1e-07 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041500 [exp] 402 / 9e-141 AT1G12910 641 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023228 [exp] 329 / 4e-112 AT5G24520 505 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10012593 [exp] 300 / 5e-102 AT1G12910 458 / 2e-164 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007274 [exp] 61 / 2e-10 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 62 / 3e-10 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10027848 [exp] 57 / 1e-08 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 56 / 2e-08 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 48 / 5e-06 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10016373 [exp] 49 / 6e-06 AT3G63460 1299 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10020916 [exp] 48 / 7e-06 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G209000.1 pacid=42770611 polypeptide=Potri.006G209000.1.p locus=Potri.006G209000 ID=Potri.006G209000.1.v4.1 annot-version=v4.1 ATGCAAAGCTCTTCAGAGAAAAGACCAGGCATCTACACTTACATAGCTCAGTGGCCTATATATTCACTAGCCTGGTCGGTTCGACAGGACAAAAAATCAC GTCTTGCCATAGGAAGTTTCCTTGAAGACTATAGCAACAAGGTGGAAATTGTTCAATTCAACCGCGACACTTCTGATTTCACCACTGATAGCCGCCTAAT CTTCGACCACCCTTATTCACCTACAAACCTCATGTTCTTCCCCTCCGAGGATGCTGCAAATCCTGATATCATCGCTACCTCCGGAGACTACTTGCGCATA TGGCAAATTCATGATGACCGAATCGAGTTGAAGTCTCTCCTTAATGGCAATAAGAGTAGTGAATTCAGTTCTGCCATAACTTCATTTGACTGGGCTGATT TCGATGTTCATCGTGTGGCCACTTCTAGTGTCGATACCACTTGTGTGATTTGGGACATAGAGAAGGAAGTTATAGACGCTCAATTAGTTGCACATGATAA AGAAGTGTTTGATATTTCATGGGGTTCATTCAATATTTTCGCATCAGTGTCGGGTGATGGCTCGGTTAGAGTTTTCGATCTAAGGAACAAAGACAGATCA ACAATAATTTATGAAAATACAATGCAAGACTGTCCTTTGCTAAGGCTAGAGTGGAACAAAAGAGACCCGAGATTTATAGCCACAGTTGGCATGGACAGTA ATAAGGTTGTTATTCTGGACATTCGCTTTCCTACAACTCCTTTAATGGAGCTATGTAAGCATAAGGCAAGTGTGAATGCTATATCTTGGTCTCCATGCAC CGGAAGGCAGATATGCTCGGTAGGTGATGATTCAAGGGCTTTGTTATGGGAAGTGGTTAGCAAGGCCGGAGTGCGACCAGAATACAGCGGTGCTGGCGCT AATAGCCAAGTGGAACCTGAAATGTGGTATGGATCAATGGCGGCGATCAATAATGTGAGGTGGTCACCTGTGGAGTTGGATTGGATTGCTATTGCTTTTT TTAGCAAGTTACAACTCCTGAAGGTCTAA
AA sequence Show only first row Show all	>Potri.006G209000.1 pacid=42770611 polypeptide=Potri.006G209000.1.p locus=Potri.006G209000 ID=Potri.006G209000.1.v4.1 annot-version=v4.1 MQSSSEKRPGIYTYIAQWPIYSLAWSVRQDKKSRLAIGSFLEDYSNKVEIVQFNRDTSDFTTDSRLIFDHPYSPTNLMFFPSEDAANPDIIATSGDYLRI WQIHDDRIELKSLLNGNKSSEFSSAITSFDWADFDVHRVATSSVDTTCVIWDIEKEVIDAQLVAHDKEVFDISWGSFNIFASVSGDGSVRVFDLRNKDRS TIIYENTMQDCPLLRLEWNKRDPRFIATVGMDSNKVVILDIRFPTTPLMELCKHKASVNAISWSPCTGRQICSVGDDSRALLWEVVSKAGVRPEYSGAGA NSQVEPEMWYGSMAAINNVRWSPVELDWIAIAFFSKLQLLKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.006G209000 [exp]	0	1
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.004G105000 [exp]	1.41	0.9498
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176900 [exp]	3.87	0.9474	CHS6,Pt-CHS.4
AT3G24750			unknown protein		Potri.002G240300 [exp]	3.87	0.8735
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113900 [exp]	4.47	0.9432
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	6.70	0.9332	Pt-CHS.7
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.015G050200 [exp]	6.92	0.9304
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.002G033600 [exp]	7.74	0.9012	DFR1,Pt-DFR.2
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051500 [exp]	7.93	0.9292	Pt-CHS.6,CHS2
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113700 [exp]	8.00	0.9230
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.001G140700 [exp]	8.48	0.9088

Compare expression of checked genes

Potri.006G209000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.