Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22380 242 / 2e-80 NAC ANAC090 NAC domain containing protein 90 (.1) AT3G44350 219 / 3e-71 NAC ANAC061 NAC domain containing protein 61 (.1.2) AT2G02450 146 / 2e-41 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT4G17980 139 / 6e-40 NAC ANAC071 NAC domain containing protein 71 (.1) AT2G17040 139 / 1e-39 NAC ANAC036 NAC domain containing protein 36 (.1) AT1G69490 134 / 5e-38 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G32510 133 / 2e-37 NAC ANAC011 NAC domain containing protein 11 (.1) AT5G39820 134 / 3e-37 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G65910 138 / 6e-37 NAC ANAC028 NAC domain containing protein 28 (.1) AT1G26870 134 / 1e-36 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076000 [exp] 372 / 4e-131 AT5G22380 226 / 4e-74 NAC domain containing protein 90 (.1) Potri.016G076100 [exp] 280 / 5e-95 AT5G22380 214 / 2e-69 NAC domain containing protein 90 (.1) Potri.001G218800 [exp] 244 / 7e-81 AT5G22380 272 / 3e-92 NAC domain containing protein 90 (.1) Potri.009G019200 [exp] 228 / 6e-75 AT3G44350 257 / 1e-86 NAC domain containing protein 61 (.1.2) Potri.003G046700 [exp] 149 / 2e-42 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.008G089000 [exp] 142 / 1e-40 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.004G038000 [exp] 143 / 2e-40 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.004G230800 [exp] 143 / 4e-40 AT2G02450 311 / 2e-103 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.003G089800 [exp] 139 / 1e-38 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020643 [exp] 245 / 2e-81 AT5G22380 283 / 1e-96 NAC domain containing protein 90 (.1) Lus10004846 [exp] 239 / 5e-79 AT5G22380 275 / 1e-93 NAC domain containing protein 90 (.1) Lus10029410 [exp] 205 / 3e-65 AT5G22380 171 / 1e-52 NAC domain containing protein 90 (.1) Lus10008419 [exp] 149 / 7e-42 AT2G02450 327 / 7e-109 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008420 [exp] 147 / 1e-41 AT2G02450 320 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10003367 [exp] 149 / 3e-41 AT2G02450 333 / 3e-110 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10007410 [exp] 141 / 1e-39 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10023208 [exp] 140 / 2e-39 AT2G02450 321 / 3e-108 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10036117 [exp] 140 / 3e-39 AT3G15510 241 / 2e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10026617 [exp] 135 / 2e-38 AT1G69490 298 / 1e-101 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.006G209200.1 pacid=42767773 polypeptide=Potri.006G209200.1.p locus=Potri.006G209200 ID=Potri.006G209200.1.v4.1 annot-version=v4.1 ATGATTCCACCAGGGTTTCGATTTTACCCAACAGAAGAAGAACTGGTCTCATTTTATCTGCATAACAAGCTTGAAGCAAGGAGAGAGGACCTCCTACGGG TTATGGACCGCCTTATACCGGTTCTTGATATATACGAGTTCAATCCATGGGAGCTTCCTCAATTTTCAGGAGATTTGTGCCATGGAGATCCTGAAGAATG GTTTTTCTTCATTCGAAGGCAAGAAAGCGAAGCCCGTGGAGGGAGGCCGAAGCGACTCACAAGTAGTGGCTATTGGAAAGCTACTGGCTCTCCTTCTCCT GTTTACTCTTCCAATAGTAATCGTAGCATTGGCGAGAAAAGAACCATGGTGTTCTACGAGGGAAGGGCTCCAAGAGGACGAAAAACCGAGTGGAAAATGA ACGAATTTAAGGCTATGGAAGAAGAAGCAGAAGCATCATATTCAAATGGTGGACATCCAAGGCTAAGGCAAGAATTCAGTTTGTGTCGGGTTTACAAGAA GTCCAAATTCGTGCGAGCATTTGATAGACGGCCATCAGGAGTGGAGATGGGTACTGAGATGAGAGCTCAAGCAACCCCCGGCAACGAGGTCACATCATCA TCATCTCATCAAAACCCTTCAACGGCGGAGACAGTACCATGCTCGCATGCTATTTTATCCTTAGGAGACCATGGCCAGACCTTCCAAACTGGAGAAAGTA GTTACACGGCAAGCATCGATACTGATAATGAACCTATTTGGGACTGGGAGCAATTAGAATGGTGCTACAGTGACAGGGACAATATTGAAAAAGTCCAATC TGCATAG
AA sequence Show only first row Show all	>Potri.006G209200.1 pacid=42767773 polypeptide=Potri.006G209200.1.p locus=Potri.006G209200 ID=Potri.006G209200.1.v4.1 annot-version=v4.1 MIPPGFRFYPTEEELVSFYLHNKLEARREDLLRVMDRLIPVLDIYEFNPWELPQFSGDLCHGDPEEWFFFIRRQESEARGGRPKRLTSSGYWKATGSPSP VYSSNSNRSIGEKRTMVFYEGRAPRGRKTEWKMNEFKAMEEEAEASYSNGGHPRLRQEFSLCRVYKKSKFVRAFDRRPSGVEMGTEMRAQATPGNEVTSS SSHQNPSTAETVPCSHAILSLGDHGQTFQTGESSYTASIDTDNEPIWDWEQLEWCYSDRDNIEKVQSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.006G209200 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.018G090966 [exp]	1.00	0.8681
AT5G56510		APUM12	pumilio 12 (.1)		Potri.014G020300 [exp]	6.70	0.7688
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.016G137900 [exp]	7.54	0.8211
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150100 [exp]	8.00	0.7576
AT5G23350			GRAM domain-containing protein...		Potri.004G068200 [exp]	8.12	0.7649
AT5G23360			GRAM domain-containing protein...		Potri.017G152900 [exp]	8.66	0.7521
AT5G23350			GRAM domain-containing protein...		Potri.004G068150 [exp]	10.39	0.7701
AT5G23370			GRAM domain-containing protein...		Potri.004G068100 [exp]	15.87	0.7553
AT5G10695			unknown protein		Potri.010G251000 [exp]	16.73	0.8015
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171300 [exp]	17.77	0.8493

Compare expression of checked genes

Potri.006G209200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.