Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06140 634 / 0 ATSNX1 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) AT5G07120 115 / 9e-28 SNX2b sorting nexin 2B (.1) AT5G58440 107 / 4e-25 SNX2a sorting nexin 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076400 [exp] 719 / 0 AT5G06140 664 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.019G124200 [exp] 101 / 5e-23 AT5G07120 778 / 0.0 sorting nexin 2B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016994 [exp] 660 / 0 AT5G06140 650 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10014225 [exp] 649 / 0 AT5G06140 645 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10021317 [exp] 550 / 0 AT5G06140 523 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10042247 [exp] 102 / 1e-23 AT5G07120 811 / 0.0 sorting nexin 2B (.1) Lus10026403 [exp] 98 / 9e-22 AT5G07120 753 / 0.0 sorting nexin 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [poplar] [flax] PX PX domain CL0145 [poplar] [flax] Golgi-transport PF09325 [poplar] [flax] Vps5 Vps5 C terminal like
Representative CDS sequence Show only first row Show all	>Potri.006G209600.2 pacid=42767706 polypeptide=Potri.006G209600.2.p locus=Potri.006G209600 ID=Potri.006G209600.2.v4.1 annot-version=v4.1 ATGGAGCAACAGCAGCAACTGCAGAGAAGTCCATCAGGGAGTCCAAGCCCTAGATCTCCGTCATCGCAGCCTTATTTATCGGTTTCGGTGACTGATCCTG TAAAATTAGGGAATGGCGTCCAGGGTTACATCTCTTATCGCGTTATCACCAAGACAAATTTACCGGAATACCAAGGGCACGAAAAGATTGTGATTCGGCG GTACAGCGATTTTGATTGGTTGCGTGATCGGCTTTTCCACAATTACAAAGGTGTATTTATCCCTCCTCTTCCAGAAAAGAGCGCTGTAGAAAAGTTTCGG TTTAGTGCTGAATTTATTGAGATGAGGAGACAAGGGCTGGATATATTTGTCAATAGGATAGCTTCGCATCAAGAGCTTCAGCATAGTGAGGATTTAAGGA CCTTTTTGCAGGCTGATGAGGAGACCATGGAAAGATTAAGATCTCAAGAGACTGGTATGTTTAAGAAGAAACCTGCTGATTTGATGCAAATTTTCAAGGA CGCGCAATCTAAAGTGAGTGACATTGTTCTTGGGAAGGAAAAACCTGTTGAAGAATCGAATCTTGAATATGAAAAGCTAAAACATTACATCTTTGAGCTT GAAAACCACTTGGCTGAAGCTCAGAAGCATGCGCATCGTCTTGTAAAGCGACATAGAGAATTGGGGCAATCGCTATCAGATTTCAGTAAGGCAGTAAAAC TCCTTGGTGCTTGTGAAGGAGATGCCCTAGGAAAGGCATTTTCTGAGCTTGGGACTAAATCAGAGGCATTATCAGTTAAGCTTCAGAAGGAGGCCCATCA ACTCTTAATGAATTTTGAAGAACCATTGAAAGATTATGTCCGTGCTGTTCAATCTATTAAGGCTACCATAGCTGAGCGGGCCAATGTCTTCAGGCATCAG TGTGAACTGGCTGAAACAATGAAGTTGAAAGAGATAAATCTTGACAAACTTATGCTAACACGTTCTTATAAAATGGGAGAAGCAGAGCATGAGTACAGGG AGTTGAAAGTGGAAAATGAGGAAGCAACTAGAAGGTTTGAGACAATTGTGAGACTGATGAACGAAGAGATAGTGCGCTTTCAAGAACAGAAAACATTGGA TATGGGGATTGCTTTCCATGAATTTGCAAAAGGACAGGTACGCTTGGCAAATAGCATTGCAGATGCTTGGAGAAGTCTTCTTCCTAAACTTGAAGCATGT TCCACACAATGA
AA sequence Show only first row Show all	>Potri.006G209600.2 pacid=42767706 polypeptide=Potri.006G209600.2.p locus=Potri.006G209600 ID=Potri.006G209600.2.v4.1 annot-version=v4.1 MEQQQQLQRSPSGSPSPRSPSSQPYLSVSVTDPVKLGNGVQGYISYRVITKTNLPEYQGHEKIVIRRYSDFDWLRDRLFHNYKGVFIPPLPEKSAVEKFR FSAEFIEMRRQGLDIFVNRIASHQELQHSEDLRTFLQADEETMERLRSQETGMFKKKPADLMQIFKDAQSKVSDIVLGKEKPVEESNLEYEKLKHYIFEL ENHLAEAQKHAHRLVKRHRELGQSLSDFSKAVKLLGACEGDALGKAFSELGTKSEALSVKLQKEAHQLLMNFEEPLKDYVRAVQSIKATIAERANVFRHQ CELAETMKLKEINLDKLMLTRSYKMGEAEHEYRELKVENEEATRRFETIVRLMNEEIVRFQEQKTLDMGIAFHEFAKGQVRLANSIADAWRSLLPKLEAC STQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Potri.006G209600 [exp]	0	1
AT5G53330			Ubiquitin-associated/translati...		Potri.012G033300 [exp]	6.92	0.9194
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Potri.003G051500 [exp]	15.90	0.8777	TED3.1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G190000 [exp]	18.57	0.8987
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Potri.012G109800 [exp]	19.13	0.9011
AT3G58030			RING/U-box superfamily protein...		Potri.006G193600 [exp]	24.00	0.8805
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067400 [exp]	31.17	0.8972
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	31.87	0.8986
AT5G03905			Iron-sulphur cluster biosynthe...		Potri.006G084300 [exp]	35.70	0.8546
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	37.13	0.8349
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	44.40	0.8802

Compare expression of checked genes

Potri.006G209600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.