Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28570 51 / 6e-06 Long-chain fatty alcohol dehydrogenase family protein (.1) AT1G03990 49 / 3e-05 Long-chain fatty alcohol dehydrogenase family protein (.1) AT5G14180 46 / 0.0001 MPL1 Myzus persicae-induced lipase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210325 [exp] 2198 / 0 AT1G03990 67 / 4e-11 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.010G069100 [exp] 48 / 4e-05 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 47 / 0.0001 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011800 [exp] 48 / 4e-05 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10022903 [exp] 47 / 0.0002 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 46 / 0.0002 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 46 / 0.0003 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 44 / 0.0008 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00732 [poplar] [flax] GMC_oxred_N GMC oxidoreductase CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.006G210150.1 pacid=42768035 polypeptide=Potri.006G210150.1.p locus=Potri.006G210150 ID=Potri.006G210150.1.v4.1 annot-version=v4.1 ATGGAGAAACAAGCAGAGATAGAACTAAGGCCTGAAGACAGAGGAGATGATTATGATGCTATTGTTGTGGGGTCTGGATATGGTGGTTCTGTTGCTGCTT GTCGAATGTCAACGGCGGGAATAAGGGTTTGTCTGCTAGAGAAAGGCCGGAGATGGAAAGCAGAGGATTTCCCAACTGACAGCTGGAAGATTATATCAGC TGTGAGGTATGAGAACCAGAACTTAGGCCTCAGATTTGGACCAGAGGATGCTTTATTTCAGTTATATGAACAGAATGATTCTTTAGCAGCAGTGGCTTGT GGACTTGGTGGAGGTTCCCTAGTCAATGCTGGAGTGATGCTGCCAACACCAATTCGTGCTAGAAGGAATCTAAAATGGCCAAAGGAATGGGAAAGGGATT GGGATATTTGTGAATCTTCTGCGGCAGCAATGCTGAGAATTCAAAGCAGTTCAGTCAAATTTCCTATAGCAAAAGTCATGGGAGAAATAGCTGAAGGAGA GTTTGAAGAAAATATTGAGAGCTCCGTAAAGCTAAGTGTGAAGTTTGATGTTGAAGAACCTCCTTCTAATCCACCAAAGCTTGAGCAGATTAATAACTGC TTTGCCTGTGGAAATTGTCTTGCTGGGTGTCCTTACAACGCCAAAAATTCTACCGATAAAAACTATCTTATCTCAGCAATACAGGCAGGATGCACTATAA GGACAAAATGTCAAGTTCAGTATGTGATCAAGAATCCCCATGGAATTTGCCAACCAGGCGGAATTAGCAGAAAAAGAAGATGGCGTGTTTACATAAATGA GATTGACTACATAACATCCGATTGGGTAATTCTGTCAGCTGGAGTTTTGGGCACAACTGAGATACTTTTCCGGTCACAGATGAGAGGATTGAGGCTTTCG GATACTCTGGGATCTGGATTCAGTTGTAATGGCAATACTCTCGCTTATGTTGCTGGAAGCCCTGCACCCCTGAATGGTTATGGATTAAACAGAAAGCAAT TATCAGAGATACCTTTCCAAGATAGGCCAGGGCCATCTATCTCTTCATCTCACACTTCTTCATTGGGTTTTACAATCCAGAGTGCTATACTTCCAAGAGC TTATCCGTATCTGTTGTTTGAAGGGATTACAACTTATACCTGGCCAACTGGTTACCAGTTCTTTCATGGGATTGTCGATAGGCTGAAACATTTTATAGGT CTTAACTTAAGCCAATCTATCATTCTCAATGCAATGGGTTATGATGAAAGTAATGGGAAAATCATGTTAGAAAAAGACACGGACAAAATCTGCTTTCATC CACCCCAGGATCCTTTACTTCCACGAAAAATCATGGCTTTTCAAAAGCTGACCAAAAAACTCGGGGGAATCCTTTTCATGTCTAGGTACAGAAGCACAGC AGTTCATCTTTTAGGCGGTTGTAATGCATCATCAGATTCTTCAGGTGGGGTATGCAACCATAAAGGTCAGGTTTTCGACCCAAAAACTCCTGCTACTGTG CATGCAGGCCTCTACGTTTGTGATGCTTCTCTAATCCCATGTTCCGTTGGCATAAACCCATCTCTTACTATTGCAACAGCCGCTGAACATGCAAGCAGGT ACCTTGTGCAGGACATTCTCGAGTACAAAAGCAAAATTAGTACTAGTGTTGCAGCTGTTGATCGGAATCAAAGTCCTGCCACTGGTAAAAAATTAGAGCA TGACGATGGATCAACTGTTCTGATTAAAGAAACAATGAGAGGCTATGTGGGGGGCATGCCATGCACAGTTCATCTAAAAATGAAAATGCACTCACAGAAT CTTAAGAGCTCTGATAAACGGAACTGGTTTATAGGAGAACCTCACCCTCTTCTGAGGGGAAAGGCTGGTGGGTATGTAGTGTTCAGAGCCATTGAAAAGG ACAGATTACATGTCATTGATGGGGAAATGGATTTGTGTTTGGTGGATTGCAGAACTCCTTATACGCAGTATATGCGCTATCGTCTTCTCCTTGCAGCTGC TTCTGGTTCCAGATATATACTTGAGGGAAAGAAGATAATGAATCCTTGCCACTTCGCATTGTACGCTTGGAGGGAGACAACAACTCTGTATGTAACATTT AATAAAGTTGCTCCGAGTGGCTCAACAGACACCATGCTGAATTTGAAAGGAGAGCTTAGAGTTTCCTTCACAGAGCTTCTGAAGTGCTTTATAAGCCTTA AAGGAAACGGGAGAGGAAGATTCATAAATCTTCTTATACAGACACTCATAAGGACTTACATCTTACAAATACCACGAGGGACTCGCGAGAACTTCATCGT AACAGATTCATGCGATGAGAGTTATCCAAGCAGCACTATCGATGATATAAGAACAGCGGATGGATATATCATTAGAAGCAGGCACTGGAAAAATGCTAGA AATCCCTTGTTGCTTAGCAGAGAAAAAGTACTAAATCCTATCCTCCTTCTCAATGGTTATTCTACTGAGAGTTACTGGCTACCAACAGAACCACATGATT TAGTCAGAACTTTGTTGGAAGAAGGGCATGAAGTTTGGCTATTGCAGACTAGATTGCACCCTCTGAATCCTGCAAACAACGCTACCATTGAAGATATTGG AAAATATGACATCCCTGCTGCATTTGGTAAGATCCTTGAAGTTCACGGGCCCAGCACAAAGATTCATGTAGTGGCACACTGTGTTGGAGGCTTGGCCATT CATATAGCTCTCATGGGAGGGCATGTCTCTGCGACCCATATAGCTTCTCTGTCTTGTACCAATTCTTCAATGTTCTTCAGGCTTACGGCATTGGCCACAA TCAAAATGTGGCTTCCCCTGGTCCCAATATCAATGGCTATACTAGGCAAGAATAAAATCCTTCCTCTTTTGGGAAAATCAAAGGGAAGTTCTGGACACAG GCTTTTGAAATACATAGCTCTGTATTTACCACGATATGAGAGATGCACGTGGAAGGAGTGTGAGGTCTTCTCTGGAATATTTGGAAATACATTCTGGCAT GAAAATGTAAGCCCCGCCATGCACCAATGGTTGAATAAGCAAAGCTCAACAAAGCTTCCCATGTCAGCATTTCCTCACCTGAGAAGAATCTGCAACTCTG GATATATTGTAGACAGTAATGGTAACAACTCATTCTTGATCCATCCAGAGAGAATGGCAATCTCAACGCTGTATATTTCTGGAGGGCGGAGTCTCCTTGT GACCCCAGAGACTTCTTATCTTGCTAACAAGTACATGAAGCTGCACCAACCTGGTTTTAGACATGAAAGGGCGGTGGTGGACGGTTTTGGGCATTCAGAT TTATTGATTGGAGAGAAGTCTCATGAGAAAGTTTTTCCTCACATAATATCTCATATCAGATTAGCCGAACAAGAAGGAAATGATTTGACTCCAAGAAAGA AGGACAGCAAAGAGGCTTTGGACTGGGGTGATGATCCTTACAGAGAATACGGGGACTTCGGTTGTTGGATTTTCGCGTTGGCTATTATTTTCTTCTTTTT TTTTTTTTTTAGTTTAACGTGGATGTCCGGGCCAGATTGCGCGCACCTCGACTAA
AA sequence Show only first row Show all	>Potri.006G210150.1 pacid=42768035 polypeptide=Potri.006G210150.1.p locus=Potri.006G210150 ID=Potri.006G210150.1.v4.1 annot-version=v4.1 MEKQAEIELRPEDRGDDYDAIVVGSGYGGSVAACRMSTAGIRVCLLEKGRRWKAEDFPTDSWKIISAVRYENQNLGLRFGPEDALFQLYEQNDSLAAVAC GLGGGSLVNAGVMLPTPIRARRNLKWPKEWERDWDICESSAAAMLRIQSSSVKFPIAKVMGEIAEGEFEENIESSVKLSVKFDVEEPPSNPPKLEQINNC FACGNCLAGCPYNAKNSTDKNYLISAIQAGCTIRTKCQVQYVIKNPHGICQPGGISRKRRWRVYINEIDYITSDWVILSAGVLGTTEILFRSQMRGLRLS DTLGSGFSCNGNTLAYVAGSPAPLNGYGLNRKQLSEIPFQDRPGPSISSSHTSSLGFTIQSAILPRAYPYLLFEGITTYTWPTGYQFFHGIVDRLKHFIG LNLSQSIILNAMGYDESNGKIMLEKDTDKICFHPPQDPLLPRKIMAFQKLTKKLGGILFMSRYRSTAVHLLGGCNASSDSSGGVCNHKGQVFDPKTPATV HAGLYVCDASLIPCSVGINPSLTIATAAEHASRYLVQDILEYKSKISTSVAAVDRNQSPATGKKLEHDDGSTVLIKETMRGYVGGMPCTVHLKMKMHSQN LKSSDKRNWFIGEPHPLLRGKAGGYVVFRAIEKDRLHVIDGEMDLCLVDCRTPYTQYMRYRLLLAAASGSRYILEGKKIMNPCHFALYAWRETTTLYVTF NKVAPSGSTDTMLNLKGELRVSFTELLKCFISLKGNGRGRFINLLIQTLIRTYILQIPRGTRENFIVTDSCDESYPSSTIDDIRTADGYIIRSRHWKNAR NPLLLSREKVLNPILLLNGYSTESYWLPTEPHDLVRTLLEEGHEVWLLQTRLHPLNPANNATIEDIGKYDIPAAFGKILEVHGPSTKIHVVAHCVGGLAI HIALMGGHVSATHIASLSCTNSSMFFRLTALATIKMWLPLVPISMAILGKNKILPLLGKSKGSSGHRLLKYIALYLPRYERCTWKECEVFSGIFGNTFWH ENVSPAMHQWLNKQSSTKLPMSAFPHLRRICNSGYIVDSNGNNSFLIHPERMAISTLYISGGRSLLVTPETSYLANKYMKLHQPGFRHERAVVDGFGHSD LLIGEKSHEKVFPHIISHIRLAEQEGNDLTPRKKDSKEALDWGDDPYREYGDFGCWIFALAIIFFFFFFFSLTWMSGPDCAHLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28570			Long-chain fatty alcohol dehyd...		Potri.006G210150 [exp]	0	1
					Potri.001G341700 [exp]	8.60	0.8694
AT4G18975			Pentatricopeptide repeat (PPR)...		Potri.011G076800 [exp]	16.06	0.8672
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117300 [exp]	18.81	0.8376	Pt-HLS3.1
AT5G20220			zinc knuckle (CCHC-type) famil...		Potri.010G092600 [exp]	37.01	0.7793
AT2G31290			Ubiquitin carboxyl-terminal hy...		Potri.005G191100 [exp]	38.92	0.7878
AT3G01920			DHBP synthase RibB-like alpha/...		Potri.001G330100 [exp]	68.50	0.8246
AT4G31040			CemA-like proton extrusion pro...		Potri.018G150000 [exp]	91.34	0.8114
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.005G182600 [exp]	95.49	0.7973	Pt-NADK2.1
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.008G106500 [exp]	115.09	0.8029
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	132.07	0.7901

Compare expression of checked genes

Potri.006G210150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.