Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28570 51 / 6e-06 Long-chain fatty alcohol dehydrogenase family protein (.1) AT1G03990 50 / 9e-06 Long-chain fatty alcohol dehydrogenase family protein (.1) AT3G23410 47 / 0.0001 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT5G14180 45 / 0.0003 MPL1 Myzus persicae-induced lipase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210150 [exp] 2219 / 0 AT4G28570 51 / 4e-06 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.010G069100 [exp] 49 / 2e-05 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 47 / 0.0001 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024922 [exp] 65 / 4e-10 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 47 / 5e-05 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10022903 [exp] 47 / 0.0001 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 46 / 0.0002 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 46 / 0.0003 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00732 [poplar] [flax] GMC_oxred_N GMC oxidoreductase CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.006G210325.1 pacid=42768783 polypeptide=Potri.006G210325.1.p locus=Potri.006G210325 ID=Potri.006G210325.1.v4.1 annot-version=v4.1 ATGGAGAAACAAGCAGAGATAGAACTAAGGCCTGAAGACAGAGGAGATGATTATGATGCTATTGTTGTGGGGTCTGGATATGGTGGTTCTGTTGCTGCTT GTCGAATGTCAATGGCGGGAATAAAGGTTTGTCTGCTAGAGAAAGGTCGGAGATGGAAAGCAGAGGATTTCCCAACTGACATCTGGAAGATTATGTCAGC TGTGAGGTATCAGAACCAGAACTTAGGCGTCAGATTTGGACCAGAGGATGCTTTATTTCAGTTATATGAACAGAATGATTCTTTAGCAGCAGTGGCTTGT GGACTTGGTGGAGGTTCCCTAGTCAATGCTGGAGTGATGCTGCCAACACCAATTCGTGCTAGAAGGAATCTAAAATGGCCAAAGGAATGGGAAAGAGATT GGGATATTTGTGAGTCTTCTGCTGCAGCAATGCTGAGAATTCAAAGCAGTTCAGTCAAATTTCCTATAGCCAAAGTCATGGGGGAAATAGCTGGAGCAGA GTTTGAAGCAAATATTGAGAGTTCTGTAAAGCTAAGTGTGAATTTTGATGTTGAAGAACCTCCTTCTAATCCACCAAGGCTTGAGCAGATTAATAGCTGC TTTGCCTGTGGAAATTGTCTTGCTGGGTGTCCTTACAACGCCAAAAATTCTACCGATAAAAACTATCTTGTCTCAGCAATACAGGCAGGATGCACTATAA GGACAAAATGTCAAGTTCAGTATGTGATCAAGAATCCCCATGGAATTTGCCAACCAGGCGGAATTAGCAGAAAAAGAAGATGGCGTGTTTACATAAATGA GATTGACTACATAACATCCGATTGGGTAATTCTGTCAGCTGGAGTTTTGGGCACAACTGAGATACTTTTCCGGTCACAGATGAGAGGATTGAGGCTTTCG GATACTCTCGGATCTGGATTCAGTTGTAATGGCAATAATCTCGCTTATGTTGCTGGAAGCCCTGCACCCCTGAATGGTTATGGATTAAACAGAAAGCAAT TATCAGAGATACCTTTCCAAGATAGGCCAGGGCCATCTATCTCTTCATCTCACACTTCTTCATTGGGTTTTACAATCCAGAGCGCTATACTTCCAAGAGC TTATCCGTATCTGTTGTTCGAAGGGATTACAACTTATAACTGGCCAACTGGTTACCGATTCTTTCAGGGGATTGTCCATAGGCTGAAGCATTTTATAGGT CTTGGCTTAAGCCAATCTATCATTCTCAATGCAATGGGATATGATGAAAGTGATGGGAAAATCATGTTAGAAAAAGACACGGACAAAATCTGCTTTCATC CACCCCAGGATCCCTTACTTCCACGAAAAATCATAGCTTTTCAAAAGCTGACCAAAAAACTCGGGGGAATCCTTTGCATGTCTAGGTACAGAAGCACAGC AGTTCATCTTTTAGGTGGTTGTAATGCATCATCAGATTCTTCAGGTGGGGTATGCAACCATAAAGGTCAGGTTTTTGACCCAAAAACTCCTGCTACTGTG CATGCAGGCCTCTACGTTTGTGATGCTTCTCTAATCCCATGTTCCGTTGGCATAAACCCATCTCTTACTATTGCAACAGCCGCTGAACATGCAAGCAGGT ACCTTGTGCAGGACATTCTCGAGTACAAAAACAAAATTAGTGCTAGTGTTGCAGCTGCTGATCAGAATCAATTTTCTGTCACGGGTAAAAATTTAGAGAA TGACAATGAATCAACTGTTCTGATTAAAGAAACCATGAGAGGCTATGTGGGGGGCATGCCATGCACAGTTCATCTAAAAATGAAAATGCAGTCACAGAAT CTTAAGAGCTTTGATAAACGGAACTGGTTTATAGGAGAACCTCACCCTCTTCTGAGGGGAAAGGCTGGTGGGTATGTAGTGTTCAGAGCCATTGAAAAGG ACAGATTACATGTCATAGATGGGGAAATGGATTTGTGTGTGGTCGATGGCAGAACTCCTTATACGCAGTATATGCACTATCGACTTCTCCTTGCAGCTGC TTCTGGTTCCAGATATATACTTGAGGGAAAGAAGATAATGAATCCTTACCACTTCGCATTGTACGCTTGGAGGGAGACAACAACACTGTATGTTACATTT AATAAAGTTGCCCAGAGTGGCTCAACAGGCACCATGCTGAATTTGAAAGGAGAGCTTAGAGTTTCCTTCACAGAGCTTCTGAAGTGTTTTATAAGCCTTA AAGGAAACGGGAGAGGAAGATTCATACATCTTCTTTTACAGACACTCATAAGGACTTACATCTTACAAATACCACGAGTGACTCGCGAGAACTTCATCGT AACAGATTCATGCGATAAGAGTTATCCAAGCAGCACTATCGATGATATAAGAACAGCGGATGGATATATCATTAGAAGCAGGCACTGGAAAAATGCTAGA AATCCCTTGTTGCTTAGCAGAGAAAAAGTACTAAATCCTATCCTCCTTCTCAATGGTTATACTATGGAGAGTTACTGGCTACCAACAGAACCACATGATT TAGTCAGAAATTTGTTGGAAGAAGGGCATGATGTTTGGCTATTGCAGACTAGATTGCACCCTCTGAATCCTGCAAACAACGCTACTATAGAAGATATTGG AAAATATGACATCCCTCCTGCATTTGGTAAGATCCTTGAAGTTCACGGGCCCAGCACAAAGATTCATGTAGTGGCACACTGTGCTGGAGGCTTGGCCATT CATATAGCTCTCATGGGAGGGCATGTCTCTGCGACCCATATAGCTTCTCTGTCTTGTACCAATTCTTCAATGTTCTTCAAGCTTACGGCATTGGCCACAA TCAAAATGTGGCTTCCCCTGGTCCCAATATCAATGGCTATACTGGGCAAGAATAAAATCCTGCCTCTTTTGGAAAAATCAAAGGGAAGCTCCGGACACAG GCTTTTGAAATTCATAGCTCGGTGTTTACCACGATATGAGAGATGCACGTGCAAGGAGTGTGAGGTCCTCTCTGGAATATTTGGAAATGCATTCTGGCAT GAAAATGTAAGCCCCGCCCTGCACCACTGGTTGAATACAGAAAGCGCAACAAAGCTTCCCATGTCAGCATTTCCTCACCTGAGAAGAATCTGCAACTCTG GATATATTGTAGACAGTAATGGTAACAACTCATTCTTGATCCATCCAGAGAGAATGGCAATCTCAACGCTGTATATTTCTGGAGGGCGGAGTCTCCTTGT GACCCCAGAGACTTCTTATCTTGCTAACAAGTACATGAAGCTGCACCAACCTGGTTTTAGACATGAAAGGGCGGTGGTGGACGGTTTTGGGCATTCAGAT TTATTGATTGGAGAGAAGTCTCATGAGAAAGTTTTTCCTCACATAATATCTCATATCAGATTAGCCGAACAAGAAGGAAATGATTTGACTCCTAGAAAAA AGTACAGCAAAGAGGCTTTGGACTGGGGTGATGATCCTTACAGAGAATATGGGGACTTCGGTTGCTGGTTTTTCGCGTTGGCTATTATTTTCTTCTTCTT GTTATTACACGTGTTGTTCTGGTGA
AA sequence Show only first row Show all	>Potri.006G210325.1 pacid=42768783 polypeptide=Potri.006G210325.1.p locus=Potri.006G210325 ID=Potri.006G210325.1.v4.1 annot-version=v4.1 MEKQAEIELRPEDRGDDYDAIVVGSGYGGSVAACRMSMAGIKVCLLEKGRRWKAEDFPTDIWKIMSAVRYQNQNLGVRFGPEDALFQLYEQNDSLAAVAC GLGGGSLVNAGVMLPTPIRARRNLKWPKEWERDWDICESSAAAMLRIQSSSVKFPIAKVMGEIAGAEFEANIESSVKLSVNFDVEEPPSNPPRLEQINSC FACGNCLAGCPYNAKNSTDKNYLVSAIQAGCTIRTKCQVQYVIKNPHGICQPGGISRKRRWRVYINEIDYITSDWVILSAGVLGTTEILFRSQMRGLRLS DTLGSGFSCNGNNLAYVAGSPAPLNGYGLNRKQLSEIPFQDRPGPSISSSHTSSLGFTIQSAILPRAYPYLLFEGITTYNWPTGYRFFQGIVHRLKHFIG LGLSQSIILNAMGYDESDGKIMLEKDTDKICFHPPQDPLLPRKIIAFQKLTKKLGGILCMSRYRSTAVHLLGGCNASSDSSGGVCNHKGQVFDPKTPATV HAGLYVCDASLIPCSVGINPSLTIATAAEHASRYLVQDILEYKNKISASVAAADQNQFSVTGKNLENDNESTVLIKETMRGYVGGMPCTVHLKMKMQSQN LKSFDKRNWFIGEPHPLLRGKAGGYVVFRAIEKDRLHVIDGEMDLCVVDGRTPYTQYMHYRLLLAAASGSRYILEGKKIMNPYHFALYAWRETTTLYVTF NKVAQSGSTGTMLNLKGELRVSFTELLKCFISLKGNGRGRFIHLLLQTLIRTYILQIPRVTRENFIVTDSCDKSYPSSTIDDIRTADGYIIRSRHWKNAR NPLLLSREKVLNPILLLNGYTMESYWLPTEPHDLVRNLLEEGHDVWLLQTRLHPLNPANNATIEDIGKYDIPPAFGKILEVHGPSTKIHVVAHCAGGLAI HIALMGGHVSATHIASLSCTNSSMFFKLTALATIKMWLPLVPISMAILGKNKILPLLEKSKGSSGHRLLKFIARCLPRYERCTCKECEVLSGIFGNAFWH ENVSPALHHWLNTESATKLPMSAFPHLRRICNSGYIVDSNGNNSFLIHPERMAISTLYISGGRSLLVTPETSYLANKYMKLHQPGFRHERAVVDGFGHSD LLIGEKSHEKVFPHIISHIRLAEQEGNDLTPRKKYSKEALDWGDDPYREYGDFGCWFFALAIIFFFLLLHVLFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03990			Long-chain fatty alcohol dehyd...		Potri.006G210325 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.001G426660 [exp]	41.35	0.6494
AT5G46550			DNA-binding bromodomain-contai...		Potri.011G077100 [exp]	43.12	0.6373
AT5G37480			unknown protein		Potri.013G065200 [exp]	44.49	0.5736
AT1G18610			Galactose oxidase/kelch repeat...		Potri.012G062100 [exp]	108.39	0.5825
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Potri.009G059400 [exp]	119.99	0.5354
AT5G22760			PHD finger family protein (.1)		Potri.009G150200 [exp]	178.58	0.5235
AT5G58370			P-loop containing nucleoside t...		Potri.019G128000 [exp]	186.86	0.5415
AT1G60650		AtRZ-1b	AtRZ-1b, RNA-binding (RRM/RBD/...		Potri.008G033000 [exp]	193.02	0.5229
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129000 [exp]	206.16	0.5279

Compare expression of checked genes

Potri.006G210325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.