Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06130 401 / 2e-141 chaperone protein dnaJ-related (.1.2) AT5G61670 348 / 3e-120 unknown protein AT2G34860 47 / 5e-06 EDA3 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G114200 [exp] 349 / 9e-121 AT5G61670 380 / 3e-133 unknown protein Potri.001G009800 [exp] 45 / 2e-05 AT2G34860 201 / 6e-66 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2) Potri.014G179800 [exp] 41 / 0.0004 AT3G17668 147 / 5e-46 ENHANCER OF ATNSI ACTIVITY, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016993 [exp] 382 / 8e-134 AT5G06130 404 / 4e-142 chaperone protein dnaJ-related (.1.2) Lus10022688 [exp] 376 / 3e-131 AT5G06130 388 / 4e-136 chaperone protein dnaJ-related (.1.2) Lus10016713 [exp] 335 / 7e-115 AT5G61670 447 / 2e-159 unknown protein Lus10021316 [exp] 328 / 9e-113 AT5G06130 348 / 3e-122 chaperone protein dnaJ-related (.1.2) Lus10014223 [exp] 296 / 2e-101 AT5G06130 295 / 1e-102 chaperone protein dnaJ-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G210500.1 pacid=42769775 polypeptide=Potri.006G210500.1.p locus=Potri.006G210500 ID=Potri.006G210500.1.v4.1 annot-version=v4.1 ATGGCTACCTTTTCTCTTTGCTCCTATCATCATCGTTTTCTTTCTCCAAATCTTATTTCCTCAAAAACCTTCTCTCCCTCACATGGAAATCCAAGACTCA GCTTCTTATCACCCAAACACGACAACTCTCCTTCTCGACTTCTCCGCTCTTCTCCTCCTACTAACTCCTCCGATTCTCTTCCTTCCAATGATAACTATTC CAGCAATTTTTGCATTATAGAAGGACCAGAGACAGTTCAGGATTTTGTTCAAATGCAGATGCAAGAAATTCAGGACAACATAAGGAGTAGGCGTAATAAG ATTTTTCTACTCATGGAAGAGGTAAGGAGATTAAGGGTGCAACAGCGAATAAAGAACCTGAAAGTGGTCGATGAGAGTGGCGAGGAAGATGCAGATGAGA TGCCTGATATGCCGTCATCAATTCCTTTTCTTCCCCATGTGACACCGAAGACATTGAGGCAGCTTTACCTGACAAGCTTCTCTTTTATATCAGGAATTAT TTTATTTGGTGGCCTTATTGCTCCAACTTTGGAACTAAAATTAGGTCTTGGGGGCACCTCATACGAGGATTTCATACGCAGCATGCATTTACCGTTGCAG TTGAGTATGGTCGATCCCATTGTAGCATCATTTGTAGGTGGGGCAGTGGGTGTCATTTCATCCTTGATGTTAATTGAAGTTAACAATGTTGAGCAACAAG AGAAGAAAAGGTGTAAATATTGCCATGGAACTGGATACTTGGCCTGTGCTCGGTGTTCTGCTAGTGGTGTTTGCTTGAGCATTGATCCCATTTCACTATC TAGTGCTTCTGATCGTCCATTACAAGTGCCCGCGACTCAAAGGTGTCCAAACTGCTCTGGTGCAGGAAAGGTGATGTGCCCTACATGCCTGTGCACTGGG ATGGTGATGGCAAGTGAACATGACCCGCGATTTGATCCATTTGATTAA
AA sequence Show only first row Show all	>Potri.006G210500.1 pacid=42769775 polypeptide=Potri.006G210500.1.p locus=Potri.006G210500 ID=Potri.006G210500.1.v4.1 annot-version=v4.1 MATFSLCSYHHRFLSPNLISSKTFSPSHGNPRLSFLSPKHDNSPSRLLRSSPPTNSSDSLPSNDNYSSNFCIIEGPETVQDFVQMQMQEIQDNIRSRRNK IFLLMEEVRRLRVQQRIKNLKVVDESGEEDADEMPDMPSSIPFLPHVTPKTLRQLYLTSFSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRSMHLPLQ LSMVDPIVASFVGGAVGVISSLMLIEVNNVEQQEKKRCKYCHGTGYLACARCSASGVCLSIDPISLSSASDRPLQVPATQRCPNCSGAGKVMCPTCLCTG MVMASEHDPRFDPFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06130			chaperone protein dnaJ-related...		Potri.006G210500 [exp]	0	1
AT1G29120			Hydrolase-like protein family ...		Potri.011G065700 [exp]	7.41	0.8796
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Potri.010G087600 [exp]	8.06	0.9085
AT1G26180			unknown protein		Potri.008G109700 [exp]	9.79	0.8971
AT5G14500			aldose 1-epimerase family prot...		Potri.001G344100 [exp]	12.00	0.8757
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Potri.012G038900 [exp]	13.03	0.8680
AT2G14910			unknown protein		Potri.001G298200 [exp]	14.83	0.8717
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.017G126700 [exp]	15.23	0.8848
AT1G28320		DEG15	protease-related (.1)		Potri.011G056100 [exp]	16.12	0.8796
AT2G38570			unknown protein		Potri.006G109500 [exp]	18.54	0.8646
AT2G39000			Acyl-CoA N-acyltransferases (N...		Potri.010G222900 [exp]	19.39	0.9018

Compare expression of checked genes

Potri.006G210500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.