Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BFRUCT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52600 770 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 745 / 0 ATCWINV4 cell wall invertase 4 (.1) AT3G13790 623 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 590 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 555 / 0 ATCWINV5 cell wall invertase 5 (.1) AT5G11920 527 / 0 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G12240 482 / 6e-164 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 478 / 2e-162 Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077400 [exp] 1010 / 0 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 1003 / 0 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227400 [exp] 593 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227500 [exp] 578 / 0 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.003G112600 [exp] 495 / 8e-169 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 486 / 8e-166 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 459 / 2e-155 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014219 [exp] 802 / 0 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10014217 [exp] 776 / 0 AT2G36190 688 / 0.0 cell wall invertase 4 (.1) Lus10021339 [exp] 761 / 0 AT2G36190 691 / 0.0 cell wall invertase 4 (.1) Lus10017015 [exp] 761 / 0 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10008392 [exp] 612 / 0 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 590 / 0 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 582 / 0 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037632 [exp] 582 / 0 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10001529 [exp] 568 / 0 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037631 [exp] 544 / 0 AT3G13790 633 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0143 [poplar] [flax] B_Fructosidase PF00251 [poplar] [flax] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0004 [poplar] [flax] Concanavalin PF08244 [poplar] [flax] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal
Representative CDS sequence Show only first row Show all	>Potri.006G210600.1 pacid=42768187 polypeptide=Potri.006G210600.1.p locus=Potri.006G210600 ID=Potri.006G210600.1.v4.1 annot-version=v4.1 ATGGCTTTGTTAAAGTTTCTCCCAGTCTTGGCATTGTTTGCTTTGCTTTTTGTGCTCAGCAACAATGGAGTTGAGGCTTCTCATAAGATTTATCTTCGCT ATCAGAGCCTTAGTGTTGACAAGGTGAAGCAAACCCATAGAACCGGGTATCACTTCCAGCCTCCTAAGAACTGGATCAACGATCCAACTGGGCCTTTGTA CTACAAGGGGCTATACCATCTATTCTACCAATACAATCCCAAAGGTGCCGTGTGGGGCAACATTGTCTGGGCTCATTCAGTTTCAAAGGATTTGATCAAT TGGGAATCCCTTGAGCCTGCAATCTACCCTTCTAAATGGTTTGATAACTATGGATGTTGGTCTGGATCTGCAACAATTCTCCCAAATGGTGAGCCCGTTA TATTCTACACGGGTATTGTTGATGAAAATAATCGTCAGATCCAAAACTATGCTGTGCCTGCAAACTCGTCGGATCCATATCTTCGTGAATGGGTTAAACC TGATGATAATCCAATAGTGTATCCAGATCCTAGCGTGAACGCTAGCGCATTTCGTGACCCGACCACTGCTTGGAGGGTTGATGGGCACTGGAGGATTTTG ATTGGCAGCAAGAAGAGAGATAGAGGGATTGCATATTTGTATAGGAGTTTGGATTTTAAGAAATGGTTCAAGGCCAAACACCCGTTACATTCAGTTCAAG GTACAGGTATGTGGGAATGCCCAGATTTTTTCCCCGTTTCTTTGTCCAGTGAAGACGGGTTGGATACCTCAGTTGGTGGATCAAATGTAAGGCATGTCTT GAAGGTTAGCTTAGACTTGACAAGATACGAGTACTATACAATAGGTACTTATGATGAGAAGAAGGATAGGTATTATCCTGATGAAGCCTTAGTTGATGGT TGGGCGGGGCTCAGATATGATTGTGGAAACTTTTATGCTTCTAAGACATTTTTCGATCCAAGCACAAACAGGAGGATTTTGTGGGGTTGGGCTAACGAGT CTGATTCTGTACAACAAGACAAGAACAAAGGATGGGCAGGAATTCAGTTGATTCCAAGGAGGGTGTGGCTAGATCCTAGTGGAAAGCAATTGCTACAATG GCCTGTTGCAGAACTGGAGAAACTAAGGAGCCACAATGTTCAACTGAGAAATCAAAAGCTCTACCAAGGATATCACGTCGAAGTTAAAGGCATCACTGCT GCTCAGGCTGATGTCGATGTTACCTTCTCTTTCCCAAGCTTGGACAAAGCTGAGCCCTTTGATCCTAAATGGGCCAAGCTTGATGCACTTGATGTCTGTG CCCAAAAGGGTTCCAAAGCACAGGGCGGGCTTGGGCCATTCGGACTGTTGACATTGGCTTCAGAAAAGCTTGAAGAATTCACTCCCGTCTTCTTTAGAGT CTTTAAAGCAGCAGACAAGCACAAAGTTCTCTTGTGCTCTGACGCGAGGAGCTCTTCCTTGGGAGTAGGACTATATAAACCACCTTTTGCTGGATTTGTT GACGTTGATTTAACTGACAAGAAACTTACACTCAGGAGTTTGATTGATCACTCTGTTGTTGAAAGTTTTGGAGCTGGAGGAAGAACCGTCATCACATCCA GGGTTTATCCGATCATTGCAGTCTTTGACAAGGCTCACTTGTTTGTGTTCAACAATGGAAGCGAGACCGTCACTGTAGAGACTCTCAATGCTTGGAGCAT GAAGGTGCCTGTGATGAATGTCCCTGTAAAGAGCTGA
AA sequence Show only first row Show all	>Potri.006G210600.1 pacid=42768187 polypeptide=Potri.006G210600.1.p locus=Potri.006G210600 ID=Potri.006G210600.1.v4.1 annot-version=v4.1 MALLKFLPVLALFALLFVLSNNGVEASHKIYLRYQSLSVDKVKQTHRTGYHFQPPKNWINDPTGPLYYKGLYHLFYQYNPKGAVWGNIVWAHSVSKDLIN WESLEPAIYPSKWFDNYGCWSGSATILPNGEPVIFYTGIVDENNRQIQNYAVPANSSDPYLREWVKPDDNPIVYPDPSVNASAFRDPTTAWRVDGHWRIL IGSKKRDRGIAYLYRSLDFKKWFKAKHPLHSVQGTGMWECPDFFPVSLSSEDGLDTSVGGSNVRHVLKVSLDLTRYEYYTIGTYDEKKDRYYPDEALVDG WAGLRYDCGNFYASKTFFDPSTNRRILWGWANESDSVQQDKNKGWAGIQLIPRRVWLDPSGKQLLQWPVAELEKLRSHNVQLRNQKLYQGYHVEVKGITA AQADVDVTFSFPSLDKAEPFDPKWAKLDALDVCAQKGSKAQGGLGPFGLLTLASEKLEEFTPVFFRVFKAADKHKVLLCSDARSSSLGVGLYKPPFAGFV DVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPIIAVFDKAHLFVFNNGSETVTVETLNAWSMKVPVMNVPVKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.006G210600 [exp]	0	1	BFRUCT1.1
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.004G049800 [exp]	5.65	0.9397	Pt-GRX.2
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016700 [exp]	5.65	0.9158
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219700 [exp]	10.67	0.9215
AT2G28690			Protein of unknown function (D...		Potri.009G027100 [exp]	11.48	0.9404
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	13.71	0.9071
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014600 [exp]	13.74	0.9402
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.008G141100 [exp]	14.42	0.9287
AT3G42880			Leucine-rich repeat protein ki...		Potri.006G139700 [exp]	15.42	0.9519
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G187032 [exp]	17.54	0.9298
AT3G06270			Protein phosphatase 2C family ...		Potri.008G198700 [exp]	18.33	0.9098

Compare expression of checked genes

Potri.006G210600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.