Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36200 1441 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 857 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 839 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 733 / 0 ATP binding microtubule motor family protein (.1) AT5G60930 249 / 4e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 245 / 2e-67 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G59540 233 / 3e-64 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G17360 237 / 9e-64 POK1 phragmoplast orienting kinesin 1 (.1) AT3G44050 233 / 9e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 231 / 9e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G077800 [exp] 1816 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 842 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 827 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 714 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 681 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 254 / 8e-70 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 245 / 1e-66 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G123500 [exp] 239 / 3e-65 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G024700 [exp] 236 / 3e-64 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021340 [exp] 1535 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 1504 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 1424 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 840 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 839 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 697 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 696 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10009073 [exp] 656 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 616 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10022697 [exp] 471 / 2e-153 AT2G36200 359 / 2e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.006G210700.1 pacid=42768337 polypeptide=Potri.006G210700.1.p locus=Potri.006G210700 ID=Potri.006G210700.1.v4.1 annot-version=v4.1 ATGTCAGGTCGCCACGAGAAAGAGAAAGGCGTTAACGTGCAAGTGCTTCTTCGTTGCAGGCCGTTTAGCGAGGACGAATTGAGGAATAATGCACCGCAAG TGGTGACCTGCAATGATTACCAGAGAGAAGTTGCGGTTTCACAGAATATCGCAGGGAAACATATCGATAGGGTTTTCACTTTCGATAAGGTTTTTGGTCC TTCAGCACAGCAAAAGGATCTTTATGAACAAGCAGTGGTGCCAATTGTGAATGAAGTTTTAGAAGGGTTCAACTGTACCATTTTTGCATACGGTCAAACT GGTACAGGCAAAACTTACACCATGGAAGGTGAATGCAAAAGATCGAAGAGTGGACCTAATGGAGAGTTGCCTTCAGAAGCCGGGGTCATACCGAGAGCAG TTCAACAAATTTTCGATACTCTTGAAGGCCAAAATGCAGAATACAGCGTGAAGGTCACTTTCTTAGAATTGTACAATGAAGAGATTACTGATTTGCTTGC TCCTGAGGAGATTTCTAGAATTTCTTTGGAGGAGAAGCAAAAGAAGCAGTTGCCTCTTATGGAGGATGGCAAAGGTGGGGTTCTTGTAAGAGGTTTAGAG GAGGAAATAGTTGCAAGTGCGACTGAGATATTCACACTTCTAGAAAGAGGATCTGCAAAGCGTCGAACAGCAGAAACTCTGTTGAACAAGCAATCGAGTC GGTCGCATTCTCTCTTTTCTATTACAATACATATCAAGGAAGCAACACCTGAAGGTGAAGAACTAATCAAATGTGGCAAGTTGAATTTGGTGGATCTAGC TGGTTCAGAAAATATTTCTCGCTCAGGTGCTAGAGAGGGTCGTGCAAGAGAAGCTGGTGAAATCAACAAAAGTCTACTTACTTTGGGGCGAGTCATTAAT GCTCTTGTGGAGCATCTTGGGCATATCCCTTACAGGGATAGCAAGCTTACCAGGCTACTTCGTGATTCACTTGGAGGAAGAACCAAAACATGTATTATAG CAACTGTATCACCAGCTGTTCATTGCCTGGAAGAGACATTGAGTACACTGGATTATGCGCACAGGGCTAAGAATATAAGAAATAAGCCGGAGGTCAACCA AAAGATGATGAAAACAACTCTTATCAAGGACCTTTATGGAGAAATTGAAAGACTTAAGGCAGAGGTTTATGCTGCCCGTGAAAAAAATGGTGTTTATATG CCGAAGGAGCGATACTATCAGGAGGAAAGTGAAAGAAAGGCCATGGCTGATCAGATAGAACAAATGGGAGTTATGATAGAAACCCATCAGAAGCAATCTG AGGAGTGGCGAGATAGGTACGATGCCCAGGTTCACCAATGTTCTGATTTGAGCAGCAAACTTAGTACCGCTGAGAAAAATTTCAATCAAACTATCAAATT GCTCACGTGTACTGAAGAAGAATTGAAGAAGTGTCGATATGGTTTGAAAGAGAGGGATTTTATCATATCTGAGCAGAGAAAAGCAGAGAATGCTCTGGCT CATCAAGCTTGTGTTTTACGATCTGACCTGGAGAAAGCACTTCAGGACAATGCTTCTTTGTTTCAGAAGATTGGTAGAGAAGATAAATTGAGTTCTGATA ACAGATCAGTGGTTAACAATTTTAGAGGGCAGCTCTCCCAACAGATTGTTTCTCTATGTAACATGGTATCTATGTCTATATCTCAGCAAAATGAACATCT TCAGCGTGTTCAGGAACTTGGTCATTCCTTCTTAGACATGCATTATAAGTCAATTGAGGAATTGAAGAAGAAATTATCGGCTTCGAGGGCCATGTATATT TCTCACATCGAGGCAGTGCAAAATGTTGTCCGTTTGCACAAGGCCAGCTCTATTGCCGGCTTAGAGGAAATTTCTTCGATGGCTTCTTCCAGCACACAGT CTATTAAAGATTATCTAGAATCAGAGGCTGGTCCAGCGGCTTCGATATTTGATGACCTCCAGAATAGTCTTTCAACTCACCAGGGAGAAGTATCTCTTTT TGCCAGGGAAATGCGTCAGCGATTCCTTGTCAGTAGCGAGAAAAGAAAGGAGGTTTCTGAATACATGAATGGATTTCTTGACAAGATTTTGGAACAATGC AAAAGCCTGGAAAATCATGCAGTGCAAGCTGATGCCATTCAAATGAAAAATATTACTGATTTTCAGGAAGCTTATGAGGAGCAATCAAAAACCGATACTG AGAAGCTTGTTGCTGATATCAATAACCTGGTTTCCAACCACCTTCAGCGTCAAAAAGAGCTGGTGGATGCAAGGCTTGTTGATCTTAGAGAAACTGCAAC TGGAAACAAGGCATTCTTGGATGGACACGTTTCTTCAATGGAGTGTGTGTCAACAGATGCAAAACGAAAATGGCATGAATTTTCCATGAAGGCAGAAGAC AGTGCTAAGGATGTTGCTGATTATTCTTCTGCCAAACATTGTAGGATGGAGTCGCTCTTACAGCAATGTGTAAGTACTGCTGGATCAGCTTTCAAGCATT GGCAGAAGACACATGACTCTGTGAACAAGATGGGAATTAGTCATGTTTCTGAATTGGTATCGCTTACAAGAAATGCATCGGAAAGCTTCGAGCAGCATGA TGCTGAGGTTGATTCTGCGCGGGTTACAGCTGAGCAAGATGTGGCAAATAATAGTGAAGATATCCTCAAGCGCATTGACAGAGTGTCAGACAAGGAGCGA GGATCTGTATCTAAGATCTTGGATGCTGTTAAAGCCCATGCAAATGCACTGGAGACTTTCAGAGAGGATCACTCTGGCAAATCTGCAGCTATCGAAGATA GAGCACATGAAACATTTGAGCAGCGATATATGGATTATGAGTCTACAGGCACAACACCAGTGAGAAGTGAGCCGGATGTTCCTAGCAAGGGGACCATTGA ATCACTTCGAGCAATGCCAATGGAAAATCTTCTCGAGGAATTTCGAGAAAATAATTCATACGAATCATTGGAGGAGAAAGAACTGAAACCATCTCTAATA CCACGGTCACCCCTTGTTCAACTGAATCAGCAATAG
AA sequence Show only first row Show all	>Potri.006G210700.1 pacid=42768337 polypeptide=Potri.006G210700.1.p locus=Potri.006G210700 ID=Potri.006G210700.1.v4.1 annot-version=v4.1 MSGRHEKEKGVNVQVLLRCRPFSEDELRNNAPQVVTCNDYQREVAVSQNIAGKHIDRVFTFDKVFGPSAQQKDLYEQAVVPIVNEVLEGFNCTIFAYGQT GTGKTYTMEGECKRSKSGPNGELPSEAGVIPRAVQQIFDTLEGQNAEYSVKVTFLELYNEEITDLLAPEEISRISLEEKQKKQLPLMEDGKGGVLVRGLE EEIVASATEIFTLLERGSAKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVIN ALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIRNKPEVNQKMMKTTLIKDLYGEIERLKAEVYAAREKNGVYM PKERYYQEESERKAMADQIEQMGVMIETHQKQSEEWRDRYDAQVHQCSDLSSKLSTAEKNFNQTIKLLTCTEEELKKCRYGLKERDFIISEQRKAENALA HQACVLRSDLEKALQDNASLFQKIGREDKLSSDNRSVVNNFRGQLSQQIVSLCNMVSMSISQQNEHLQRVQELGHSFLDMHYKSIEELKKKLSASRAMYI SHIEAVQNVVRLHKASSIAGLEEISSMASSSTQSIKDYLESEAGPAASIFDDLQNSLSTHQGEVSLFAREMRQRFLVSSEKRKEVSEYMNGFLDKILEQC KSLENHAVQADAIQMKNITDFQEAYEEQSKTDTEKLVADINNLVSNHLQRQKELVDARLVDLRETATGNKAFLDGHVSSMECVSTDAKRKWHEFSMKAED SAKDVADYSSAKHCRMESLLQQCVSTAGSAFKHWQKTHDSVNKMGISHVSELVSLTRNASESFEQHDAEVDSARVTAEQDVANNSEDILKRIDRVSDKER GSVSKILDAVKAHANALETFREDHSGKSAAIEDRAHETFEQRYMDYESTGTTPVRSEPDVPSKGTIESLRAMPMENLLEEFRENNSYESLEEKELKPSLI PRSPLVQLNQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	0	1
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.015G070300 [exp]	2.23	0.9202
AT4G12540			unknown protein		Potri.013G040800 [exp]	4.89	0.9031
AT5G42700	B3		AP2/B3-like transcriptional fa...		Potri.014G031600 [exp]	6.92	0.8988
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	7.00	0.8941	CYCA3.1
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	7.34	0.8882	Pt-ATBRCA1.1
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	7.74	0.8842
AT5G45700			Haloacid dehalogenase-like hyd...		Potri.011G072000 [exp]	8.24	0.9027
AT3G56870			unknown protein		Potri.014G181200 [exp]	8.36	0.8799
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	9.16	0.8816
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	10.48	0.8996

Compare expression of checked genes

Potri.006G210700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.