Plant FIBer expression Database

Potri.006G210900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52610 504 / 8e-177 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G078000
[exp]
544 / 0 AT3G52610 423 / 7e-145 unknown protein
Potri.006G210800
[exp]
234 / 4e-75 AT3G52610 206 / 2e-64 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014214
[exp]
558 / 0 AT3G52610 484 / 5e-169 unknown protein
Lus10022699
[exp]
445 / 2e-155 AT3G52610 362 / 5e-123 unknown protein
Lus10022698
[exp]
427 / 1e-146 AT3G52610 380 / 3e-128 unknown protein
Lus10014215
[exp]
418 / 4e-143 AT3G52610 372 / 3e-125 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G210900.1 pacid=42769874 polypeptide=Potri.006G210900.1.p locus=Potri.006G210900 ID=Potri.006G210900.1.v4.1 annot-version=v4.1
ATGCCTAACCATGGCCAAGACCAATTAGACCCGAACCCACAAGCACCAGAGCCCAAGGCTCGACCAGTTGGCGCCACTGAGTACAGTTGGTGCAGATCAG
TCCCTCTTGGCACAGGCATCACGGTCTTGGCTCTCCTCTTATCAAAACAACCCGATATCCATCTTCTTCAAACCACCCTCGACAAACTACAAAACTCCCG
TCCTCTGCTCCGTACTAAGCTCCGTTTCAATTCCACCACCAACACCTTCTCCTTTATCACTCCACCCGCTCCTCACGTCCAAATCCAACCGTTCGATCTT
CCATCGACGGCTGACATAATCTCCAACAGCGACCAAAACATAGACCCTTACCACATTATTTTAGAGCACGAACTGAACAAGAATTCGTGGTCAGCATATC
TTGACCAATCATCAGACGCAGAAACCAACGTGTTTTTTATTACTCTTTACACGTTGAGTGAAAACCGTTGGGCGGTGGTCCTCCGGCTGCACACGTCAAC
ATGCGACCGTGCGGCGGCAGTAGGGTTGTTGAGAGAACTGTTGGTTCTGATGGGTGGGGAAAATCAAGGAGGGATAACCAAGGAATATGAGAATGAAGTG
GAGGTTAGTTTGGGAATTGAAGATTATATCCCGAGTGGGAAGGGTAACAAGCCCTTTTGGGCGCGTGGAATAGACATGCTTGGATATTCTTTGAATTCGT
TTAGGTTGTCCAATTTGGATTTTGTAGATGCTGATTCTCCCAGAGGCTCTCAAGTGGTGAGGCTTCAAATGAACTCCGATGATACCCAAAAGCTTCTTGA
TGGTTGCATGTCAAGAGGGATTAAACTTAGTGGAGCCTTGGCTGCTGCTGGTTTAATTGCAGCACAATCCACTAAAGACCTTCCTGATCATCAGATGGAG
AAGTATGCTGTTGTAACCCTCATCGACTGCCGCTCCATTCTTGACCCAGTTCTCAGTAGCAATCATATCGGATTTTATCACTCTGCCATGTTAAATACAC
ATGACGTAAGTGGAGGTGTAATGCTATGGGATCTAGCAAAAAGGTGCTACATGGCCTATACGAATGCGAAGAACAATAACAAGCATTTCACAGACATGGG
TGACCTGAACTTCCTCATGTGCAAGGCAATCGAAAATCCAGGTTTAACTCCATCATCATCGATGAGGACTGCCTTCATTTCAGTATTTGAGGACCCTGTC
ATTGATGATACTAATGAAATGCATGGAAAAGTGGGAGTCGAGGATTATGTGGGGTGCTCCTCAGTTCATGGTGTGGGCCCTTCCGTTGCCATATTTGACA
CCGTAAGAAATGGACGGTTGGATTGTGCATGTGTGTATCCATCACCATTGCATTCAAGGGATCAAATGCAGAAGTTGATTGATGATATGAAGAGAATTCT
TGTTGATGGTTGTGGCAGTGTGGAGAGTGAGAGCTAG
AA sequence
>Potri.006G210900.1 pacid=42769874 polypeptide=Potri.006G210900.1.p locus=Potri.006G210900 ID=Potri.006G210900.1.v4.1 annot-version=v4.1
MPNHGQDQLDPNPQAPEPKARPVGATEYSWCRSVPLGTGITVLALLLSKQPDIHLLQTTLDKLQNSRPLLRTKLRFNSTTNTFSFITPPAPHVQIQPFDL
PSTADIISNSDQNIDPYHIILEHELNKNSWSAYLDQSSDAETNVFFITLYTLSENRWAVVLRLHTSTCDRAAAVGLLRELLVLMGGENQGGITKEYENEV
EVSLGIEDYIPSGKGNKPFWARGIDMLGYSLNSFRLSNLDFVDADSPRGSQVVRLQMNSDDTQKLLDGCMSRGIKLSGALAAAGLIAAQSTKDLPDHQME
KYAVVTLIDCRSILDPVLSSNHIGFYHSAMLNTHDVSGGVMLWDLAKRCYMAYTNAKNNNKHFTDMGDLNFLMCKAIENPGLTPSSSMRTAFISVFEDPV
IDDTNEMHGKVGVEDYVGCSSVHGVGPSVAIFDTVRNGRLDCACVYPSPLHSRDQMQKLIDDMKRILVDGCGSVESES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52610 unknown protein Potri.006G210900
[exp]
0 1
AT2G01570 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSO... Potri.004G089800
[exp]
1.41 0.8144
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Potri.006G127500
[exp]
8.12 0.7896
AT1G11340 S-locus lectin protein kinase ... Potri.011G036600
[exp]
12.44 0.7308
AT1G70670 AtCLO4 Arabidopsis thaliana caleosin ... Potri.008G133800
[exp]
31.85 0.7604 Pt-CABP1.1
AT1G66920 Protein kinase superfamily pro... Potri.017G035500
[exp]
40.00 0.7568
AT2G35940 HD BLH1, EDA29 embryo sac development arrest ... Potri.009G017400
[exp]
69.16 0.7482
AT5G63450 CYP94B1 "cytochrome P450, family 94, s... Potri.002G042200
[exp]
97.03 0.7295
AT2G26930 CMK, CMEK, ISPE... PIGMENT DEFECTIVE 277, 4-\(cyt... Potri.009G021800
[exp]
104.38 0.6880
AT2G40890 REF8, CYP98A3, ... cytochrome P450, family 98, su... Potri.016G031100
[exp]
113.79 0.7176
AT1G25480 Aluminium activated malate tra... Potri.008G118600
[exp]
116.83 0.7141

Potri.006G210900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.