Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11470 344 / 6e-119 4'-phosphopantetheinyl transferase superfamily (.1.2.3) AT2G02770 271 / 5e-86 4'-phosphopantetheinyl transferase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G078400 [exp] 504 / 0 AT3G11470 328 / 8e-113 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Potri.010G238500 [exp] 54 / 3e-08 AT3G11470 56 / 8e-09 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021344 [exp] 386 / 4e-135 AT3G11470 349 / 7e-121 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10017021 [exp] 373 / 2e-129 AT3G11470 327 / 1e-111 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10008521 [exp] 62 / 1e-10 AT3G11470 62 / 2e-10 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10004722 [exp] 60 / 4e-10 AT3G11470 62 / 8e-11 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0670 [poplar] [flax] 4PPT PF01648 [poplar] [flax] ACPS 4'-phosphopantetheinyl transferase superfamily
Representative CDS sequence Show only first row Show all	>Potri.006G211300.2 pacid=42769464 polypeptide=Potri.006G211300.2.p locus=Potri.006G211300 ID=Potri.006G211300.2.v4.1 annot-version=v4.1 ATGTTCTCTTTTATGCAAAAGATGCTTAGATTTCAAAGGAGTTTCTCTGTTTCCCCCTTCCCTACACTTCCCTTACAGCTTCCATCTCCAATGGAAACCC ATCTTTGGTTTGTTGTGCCTGATGAATTCAAGAGCGTGTCTCTTTTGAATCAATACATGGAACTTCTATCTCCATGTGAGAAAGAAAATGTTTTGAGTAT GCGTGGAGAGCAGCTCCAGAAAAGTGCCTTGCTTGCTCGTACTTTGGTTCGCACTACTATTGCAAGATATCAGATAAATAATCGTGTTGTTGATCCAAGA TCTTTGAAGTTCAAGAGGAATGTTCATGGAAAGCCTGAGCTAGAGTGGGAAAGTGATGGTGGTCAGTGTCCTTCACCATTACACTTCAATATCTCACATA CTTCGTCCTTGATAGCTTGTGGAGTGACTGTGAATTCATCGATTGGAATTGATATAGAAGAGAAGCAACGGAAGATTAAAAACAATATCTTAGCTTTTGC ACGGCGTTACTTCTCTCTCCATGAAGTGGAACATTTAAGTGCTATTTCAGACTCTGAAGTTCAGCGCCAGGAATTTGTAAAGTTATGGACTCTCAAGGAG GCATATGTGAAAGCTTTGGGAAGAGGCTTCTCTGCTGCACCTTTCAAGACTTTCACCATTTGCATAAAGAATGCCTTTAGGACGGGCTTTGATCATGCTG ATGATATAGAATCTGGGGCATCTGAAGTAGTTGTTGAATCTTCTGATCACCCTGAGAGGCTCACAAACAACTGGCAATTTGGACTCTTTGAACTGGCCAG TTCTCATTATGCTGCCGTTTGCATGGAAAAAGATAAAACTAGTGATGCTGGGATGAGTGCTCCAATGAGATTGACTGTACGGAAAACCATTCCATTCGTT GAAGATGAGTGCATTTCTGGAACTGATGCAGTAGTACCTATTGCAGGCTTGATCGAGCAATTTTGA
AA sequence Show only first row Show all	>Potri.006G211300.2 pacid=42769464 polypeptide=Potri.006G211300.2.p locus=Potri.006G211300 ID=Potri.006G211300.2.v4.1 annot-version=v4.1 MFSFMQKMLRFQRSFSVSPFPTLPLQLPSPMETHLWFVVPDEFKSVSLLNQYMELLSPCEKENVLSMRGEQLQKSALLARTLVRTTIARYQINNRVVDPR SLKFKRNVHGKPELEWESDGGQCPSPLHFNISHTSSLIACGVTVNSSIGIDIEEKQRKIKNNILAFARRYFSLHEVEHLSAISDSEVQRQEFVKLWTLKE AYVKALGRGFSAAPFKTFTICIKNAFRTGFDHADDIESGASEVVVESSDHPERLTNNWQFGLFELASSHYAAVCMEKDKTSDAGMSAPMRLTVRKTIPFV EDECISGTDAVVPIAGLIEQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.006G211300 [exp]	0	1
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	2.82	0.9215
AT1G22060			unknown protein		Potri.008G029800 [exp]	9.48	0.8906
AT5G13890			Family of unknown function (DU...		Potri.010G067000 [exp]	10.67	0.8741
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G045300 [exp]	11.61	0.8010
AT1G67040			unknown protein		Potri.017G116000 [exp]	12.40	0.8683
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G226904 [exp]	16.49	0.8617
AT3G29180			Protein of unknown function (D...		Potri.017G088000 [exp]	18.16	0.8792
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.004G105200 [exp]	18.76	0.8574
AT1G67570			Protein of unknown function (D...		Potri.008G178100 [exp]	23.32	0.8496
					Potri.006G056101 [exp]	28.28	0.8711

Compare expression of checked genes

Potri.006G211300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.