Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11460 772 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 472 / 2e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 469 / 3e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 453 / 2e-151 MEF22 mitochondrial editing factor 22 (.1) AT1G08070 446 / 7e-148 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 447 / 1e-146 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 443 / 4e-146 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 432 / 3e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 427 / 1e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 425 / 5e-140 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322100 [exp] 509 / 1e-173 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 477 / 6e-161 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 463 / 2e-155 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 461 / 5e-154 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 456 / 2e-151 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 447 / 1e-148 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 441 / 2e-146 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 439 / 3e-146 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 440 / 5e-146 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014211 [exp] 860 / 0 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022702 [exp] 675 / 0 AT3G11460 641 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 478 / 1e-160 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 465 / 3e-156 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 447 / 1e-148 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 443 / 5e-146 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035815 [exp] 441 / 1e-145 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 434 / 2e-143 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 429 / 4e-140 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10030053 [exp] 422 / 3e-139 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.006G211400.3 pacid=42770093 polypeptide=Potri.006G211400.3.p locus=Potri.006G211400 ID=Potri.006G211400.3.v4.1 annot-version=v4.1 ATGACTATGAAGACCAAATTATATCACCATCTCCAATCAACCACAACAAAGAACCCACAATGGAACACCCTTTTAAGAGAAGCAGCAAACAAATCCCTTT TCACCAAAGCTCTCTCTCTATACCTCCACATGCTCCGCTCTGGGGCATCGCCAAACGCCTTCACTTTCCCATTCGCTATCAAATCCTGTGCCGCGCTTTC TCTCCCTATCACGGGAAAACAGCTCCATTGTCACGTCTTTAAAACCGGGTGCTTATTAGAACCTTTTGTACAAACCTCTTTGATTTCTATGTACGGCAAG TGCAGCTTGATCGATAATGCACGCAAATTGTTTGATGAAAATCCTCAATCGAGAAAATTAACCGTTTGTTACAATTCTTTGTTATCTGGTTATGCATTGA ATTCTAGAGTTAAAGATGTGGTCGTGTTGTTTTGTGAAATGAGGGAATTGGGCGTGGAAATTAATGGGGTTACGATGTTGGGTTTGGTTCAGCCTTGTGG GATCCCGGGGAATTTGGGATTGGGGATGTGTGTTCATGGTTTTTGTGTGAAGTTTGGTTTGGATATGGATTCATCTGTTGGGAATTGTTTGCTTACAATG TATGTGAAAAGTGGGGAAATTGATTGTGGAAGGAAGCTGTTTGACGAGATGCCGCGGAAAGGGTTGATCACTTGGAATGCAATGATTAATGGGTATGCTC AAAACGGGCTTGCTAATAATGTTTTGGAACTTTATAAGGAGATGGAATCGAAAGGGTTCTGTCCTGATCCTTTAACACTTGTTGGGGTTCTTTCTTCTTG TGCTCATCTTGGTGCACTTAGTGTTGGTAAGGAGGTAGAGAGGAAAATGGAGGGTTTTGGGTTTAGCTCGAATCCGTTTTTGAATAATGCTCTGGTTAAT ATGTATGCGAGATGTGGTAATTTGAAAAAGGCTAGGGATATATTTGATGGCATGCCAGTGAAAAGTGTAGTTTCATGGACGGCAATCATAGGTGGGTATG GAATGCATGGACAGGGAGAGGTTGCGGTGGAGCTTTTTGATGAGATGATTAGGGGTGGAATTAAACCTGATGGCACAGCTTTTGTAAGTGTTTTGTCTGC ATGTAGTCACGCAGGATTGACTAACAAGGGGTTGGATTATTTTGGTGTCATGGAGAGGAAGTACGGGTTGCGGCCTGGTGCAGAGCATTACTCTTGTATG GTGGATCTTTTAGGACGCGCAGGTCGGCTCAATGAGGCCCGGGAGCTTATTGAGTCTATGCAAGTGAGAGCTGATGGTGCATTATGGGGGGCCCTTTTGG GTGCTTGTAAAATCCACAGAAATGTAGAGTTAGCGGAGTTGGCTTTTGAGCAGGTAATTGAGCTTGAACCTACAAATACTGGCTACTATGTTTTGTTATC TAATGTATATACTGAGGCAGGGAATTTGGAGGGGATACTTAGAGTTCGGATGTTGATGAGGAAGCGGAAGCTCAAAAAGGATCCAGGGTGTAGTTATGTA GAATTTAAAGGGAGAGTTCACCTTTTCTTTGCTGGAGATAGAAATCATCCTCAAACAAATGAAATATACAAAAAGTTGAATGAGTTAGAAAATTTGGTGA AGGACCTCGATGGATGTAAGAAGAATGATCATGAGAGAAGAGAAGAATATCTTAATAGTATGGGTGTGCATAGCGAAAAGTTGGCTGTTGCATTTGCACT CTTAAACACCAGGAAAGAAACAGAGATTATTATAATAAAAAATCTTAGGATATGCGGAGATTGTCACTTGTTCATAAAATTGGTTAGCAAGATTGTGGAT CGTCAATTTGTTGTCAGAGATGCAACCCGCTTTCACCATTTCAAGAATGGATTCTGTTCTTGCAAAGAGTACTGGTAA
AA sequence Show only first row Show all	>Potri.006G211400.3 pacid=42770093 polypeptide=Potri.006G211400.3.p locus=Potri.006G211400 ID=Potri.006G211400.3.v4.1 annot-version=v4.1 MTMKTKLYHHLQSTTTKNPQWNTLLREAANKSLFTKALSLYLHMLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGK CSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTM YVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVN MYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVELFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCM VDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYV EFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVD RQFVVRDATRFHHFKNGFCSCKEYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	0	1
AT3G15130			Tetratricopeptide repeat (TPR)...		Potri.006G244500 [exp]	2.82	0.7482
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.003G041650 [exp]	5.47	0.6901
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.018G152300 [exp]	8.88	0.7572
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Potri.007G129600 [exp]	10.09	0.6604
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	11.09	0.7401
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	12.48	0.6943
AT2G33730			P-loop containing nucleoside t...		Potri.015G037200 [exp]	16.97	0.7039
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G034300 [exp]	24.81	0.6659
AT4G22350			Ubiquitin C-terminal hydrolase...		Potri.016G014000 [exp]	29.15	0.6429
AT3G14580			Pentatricopeptide repeat (PPR)...		Potri.001G379500 [exp]	31.98	0.7000

Compare expression of checked genes

Potri.006G211400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.